UFO01334.5prime Sequence
1226 bp (1048 high quality bases) assembled on 2008-08-22
> UFO01334.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGATGATGATGGAGGCGGCAGCCGCGGCAGCAGCGGCGGCATTGCA
ACAGCAGCAGCAACAGCAATCACCACTCCATTCGCCGGCGAATGAAGTTG
CGATTCCCACAGAACAGCCAGCGGCAACAGTGGCAACAGGAGCCGCTGCT
GCAGCAGCCGCAGCAGCAACACCGATTGCAACTGGCAACGTCAAAAGCGG
CAGCACCACCAGCAACGCCAATCACACCAACAGCAACAATAGTCACCAGG
ACGAGGAGGAGCTGGACGATGAGGAGGAGGACGAGGAGGAGGATGAGGAC
GAGGATGATGAGGAGGAGAATGCCTCGATGCAATCGAATGCTGATGATAT
GGAGCTGGATGCGCAGCAAGAAACCAGAACTGAGCCAAGTGCAACAACAC
AACAGCAGCATCAGCAGCAGGATACAGAGGATCTTGAGGAGAACAAGGAT
GCGGGGGAGGCTAGTTTAAATGTTAGCAATAATCACAATACAACCGATAG
CAATAATAGTTGTAGTCGAAAGAACAACAATGGCGGCAATGAAAGTGAGC
AACATGTGGCCAGTTCGGCGGAGGACGATGATTGCGCCAACAACAATACA
AATACCAGCAATAACAACAATACCAGCAACACCGCCACCAGCAACACGAA
CAACAACAATAATAATAACAGCAGCAGCGGCAACAGCGAGAAGCGCAAGA
AGAAGAACAATAACAACAACAACGGCCAGCCTGCTGTTCTATTAGCTGCC
AAAGATAAAGAGGTAAGTTTCAACGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCAC
AATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCACAGAGTCAGCGAGCTCGATATCAAA
TTACGCCCCGCCTGCCATCATCGCAGTACTGTTGTATTTCATTAGGCATT
CTGCCGACTGAGCCATCCCAAACGGCATGATGACTGAATGCAAGCGATCA
GAACTGTGCCTTGCTAAATTGGCATGGTGAACCGGGGCGAAAATGGCCAA
TGTGGCCAGTTATATCACACCCGGTG
UFO01334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ct-RE | 11035 | CG11387-RE | 833..1591 | 54..812 | 3795 | 100 | Plus |
| ct-RD | 10732 | CG11387-RD | 593..1351 | 54..812 | 3795 | 100 | Plus |
| ct-RC | 11062 | CG11387-RC | 923..1681 | 54..812 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7646221..7646991 | 54..824 | 3855 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..3051 | 70..825 | 333 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2967 | 84..776 | 325 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..7035 | 114..466 | 312 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6943 | 69..305 | 298 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6929 | 99..300 | 290 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2910 | 100..776 | 288 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6915 | 161..331 | 281 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2856 | 162..770 | 267 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7002 | 175..469 | 260 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6898 | 163..292 | 255 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2430 | 651..773 | 246 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2867 | 212..816 | 228 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2666 | 406..769 | 217 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6880 | 212..371 | 208 | 61.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1163 | 145..257 | 194 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1173 | 160..246 | 189 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2895 | 170..299 | 178 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6855 | 236..370 | 177 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2663 | 73..225 | 176 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2955 | 160..312 | 173 | 59 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3255..3375 | 169..291 | 168 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1157 | 671..776 | 165 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 255..472 | 163 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7112 | 413..770 | 162 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7142..7200 | 230..288 | 132 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1614 | 138..265 | 122 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6912 | 403..493 | 121 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 413..472 | 121 | 71.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8639..8677 | 204..242 | 114 | 76.9 | Plus |
UFO01334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:59 Download gff for
UFO01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ct-RC | 917..1681 | 46..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:50 Download gff for
UFO01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ct-RB | 583..1362 | 46..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:58 Download gff for
UFO01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ct-RC | 917..1681 | 46..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:58 Download gff for
UFO01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7646215..7646994 | 46..828 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:59 Download gff for
UFO01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7540248..7541027 | 46..828 | 99 | == | Plus |
