UFO01335.5prime Sequence
1219 bp (1023 high quality bases) assembled on 2008-08-22
> UFO01335.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAACCTCGCCGACGTTTGCCGTATTTGCGCCAACAAAATTATGGGCC
ACCAGCGAGATCGCAACATATTCATTCACATGCGGGGAAAATATTTGGGT
CAACTGAAGCTAATCACGGGAGTGGAGCTGACAAGAAACCAGGGGCTGCC
GGAGATTGTTTGCGAGCGCTGCTTCTCCGAGCTGGACCTGGCCACCAAGT
TCCGCGAGCGGTGCATCTTCTCGCAAAAGTACCTGCTGGATATCATAAAG
AAGACCAGTGATCAAAGCACTGTTCACGTTGAGCTTAGTTCCGAGCCGCT
GGACGAGCAACTGATCGATGCGGATCAATTGGAGACGCACTACGATGACG
ACCAGTACGTTTGTTATCAAGGCACGAAAGAGGAACACCAAGACCTAGAG
GAAATCGAGCTGGATGACGACCCCTCTGCCGCTGTGATAGCGGCAGCAGA
GGCGGCAGCAGAAGCGGCGCAGCAGGAGGATCTACAGGAGCAGGAAATGG
AGCGGGCCGCCAAGAGGCGCAGTAACTTCTTTATCTGCGACGAGTGTGGA
ACCCTGTTCCACGATGCGTTCCTGTACACCGAGCATTTAAATGGGCACCA
GAACCGGCGGGATATGAACCAGTTCTTCCCCTGCCCTGAGTGCCCACAGA
CTTTTAACAAGAAGGCGCTTCTCAAGCAGCATCGCACCCAGGTTCATTTA
ATTAACCGCAGGTTCCAGTGCACCATCTGCCACGAGGCTTTCGCGTCTCT
GGGCGCTAAGTTGCGGCACGACAAGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACAATAAAAACGCCCGGCGCAACCGAGCGTTCTGAACAATCCAGATGGAG
TTCTGAGTCATTACTGGATCTATCACAGAGTCAGCGAGCTCGATATTCAA
ATTACGCCCCGCCTGCCACTCATCGCAGTACTGTTTGTATTCATTAGCAT
TTGCGACTGAGCCATCCAAACGCATGATGACCTGATCGCAGCGGCATCAG
ACTGTGCCTTGCTTAAATTTGCATGGTGGACGGGGAAGATGTCATTCGGC
CAGTTATATCAACCTGTGG
UFO01335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14667-RB | 1260 | CG14667-RB | 70..842 | 52..824 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5375276..5375925 | 176..825 | 3250 | 100 | Plus |
| 3R | 32079331 | 3R | 5375091..5375216 | 52..177 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:26 has no hits.
UFO01335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:43 Download gff for
UFO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RA | 22..799 | 52..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:52 Download gff for
UFO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RA | 22..799 | 52..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:35 Download gff for
UFO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RB | 70..845 | 52..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:35 Download gff for
UFO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5375081..5375216 | 39..177 | 94 | -> | Plus |
| 3R | 5375278..5375929 | 178..830 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:43 Download gff for
UFO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1200803..1200938 | 39..177 | 94 | -> | Plus |
| arm_3R | 1201000..1201651 | 178..830 | 99 | == | Plus |
