UFO01336.5prime Sequence
1185 bp (1014 high quality bases) assembled on 2008-08-22
> UFO01336.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGT
CGGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCG
AGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCAA
CGACCGCGAGGAGAGCCTGAGCGTGGACGACGACAAGCCGCGGGATCTGA
GCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGCCTCGCCC
ACCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGGGCGGGCGC
AGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACCCTTCAAGC
TGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGCAGAGCTTC
AGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCGATTGTCCT
GCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGGCGCATCCG
GCGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACAGTGTGGAG
TGCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAGCTGAGGAT
AAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGCAGCATCCG
TCGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGACCGGCTAC
CATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACGTCGCCGGA
GCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGCATTC
TCACAATAAAAAAACGCCCGGCGCACCGAGCGTCTGAACAATCAGATGGA
GTTCTGAGTCATACTGATCTATCACAGAGTCAGCGAGCTCGATATCATAC
GCCCCGCCTGCCACTCATCGCAGTACTGTGTATCATAAGCATCTGCGACT
GCAAGCATCACAAACGGCATGATGACCTGAATTCCAAGCGCATCAGAACC
TTGCCGCCCTGGCATATTATATATTTGTGCCCCCC
UFO01336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 2668 | CG18455-RC | 1360..2136 | 52..828 | 3855 | 99.7 | Plus |
| Optix-RB | 1470 | CG18455-RB | 162..938 | 52..828 | 3855 | 99.7 | Plus |
| Optix-RA | 2358 | CG18455-RA | 1050..1826 | 52..828 | 3855 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8041221..8041997 | 52..828 | 3855 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:01 has no hits.
UFO01336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:43 Download gff for
UFO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 1044..1826 | 43..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:53 Download gff for
UFO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RB | 73..855 | 43..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:07 Download gff for
UFO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 1044..1826 | 43..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:07 Download gff for
UFO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8041215..8041997 | 43..828 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:43 Download gff for
UFO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3928720..3929502 | 43..828 | 99 | == | Plus |
