UFO01342.5prime Sequence
1258 bp (1047 high quality bases) assembled on 2008-08-22
> UFO01342.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGATGCTATCAACCTATCAGCACGACTATGTCCCGCCCAGTGCCAA
ACGGTACGAGTTTCTAACGCGGCCCAGGGGCGCCGAGGCTCACAGTGGTC
CGCAGGTCAAGGAGTGCGAATGCGTCGACGAGTCCAAGATCATGATGCCG
CCGAACGCGTCTAAGGACTGTGGCGGCGTCGAGTGGACGGGCATAGCGCC
AATGGGAAAGCTGGTGGATCCGCGTATCATACCCACCCAGCTGACTCAGG
ACCAGGTGGACAAGATGGCCTTCTCCGCGGAAACAGATTGCTTTAAGCTG
CAACCCAACCGCTTTCTCAAGATCTTACGTACAGTCTACCCGGATCTGTA
TGAACGCCTGAAGGTCATGCCCAAGGAGGAGCTGAGCCGCAGGCTGGAGA
CCAACCGTATGAACACCACCTATCAGATCGATTACTGTAACATGAACGAG
TACCCGGAGGGTATTTATGAGAGCCTAAAGACGGAGGACGAGTCCAAGAA
CGCCAACAAGCTGATGAGCGAACGTGGACCCTGCAACGAGTTCCGCTCGA
ACGTGATGAACGAACTGGAGCGGGAGGCGTCCGCTGGCTACGAGATGTCT
AGCGACGAGTGCCAAAAGAACTACAAGCCATTCAAGACCAGCTTCTCGGA
CTCCTCGCAGACCATCGAATCCGGCAGCAGTTCGCACTGGAACTCCGCCC
CGACCACATACCGGAAGGTGCCGACCTTCAGCGAGTACATGGACTCGATA
AGCCGGAACGGCTGCGTCATCATGCGCAACAAGTTGCACGATCACTCCAA
GTGCTTGGCCCAGTACTGCAAGCACGAGCTCAAGTTCACTTGCACTGACA
TGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATATCATATCATATCATATCATATCACACTAGCCTAGGAGATCCTGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGCGGCACCGAG
CGTTCTGAACAATTCAGATGGAGTTCTGAGGTCATACTGGATCTATCAAC
AGGAGTCCAGCGAGCTCGATATCAAATAGTCGCTTGCATTATCATTACTG
GTTGTATTCATAGCATTCGGCGCACTGGAAAGCCTCCAACCGCATAGGAA
CTGATTTGCACGGCCATAGCACCTGTGCCCTTGCTATATTGCCTTGGGAA
CGCGGGCG
UFO01342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-RA | 998 | CG8813-RA | 95..944 | 54..903 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2869746..2870595 | 54..903 | 4235 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:53:33 has no hits.
UFO01342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:11 Download gff for
UFO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..949 | 41..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:08 Download gff for
UFO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..949 | 41..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:24 Download gff for
UFO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..949 | 41..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:24 Download gff for
UFO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2869737..2870600 | 41..908 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:11 Download gff for
UFO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2869737..2870600 | 41..908 | 99 | == | Plus |
