UFO01344.5prime Sequence
1219 bp (1049 high quality bases) assembled on 2008-08-22
> UFO01344.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCGGTAGCGGAGGATT
CGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAACAAGGCCTGGTGCG
TCAAGGACATCTGCGGCATTGTGTGCGTAATCATGACCTGGCTGCTTATC
CTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTCTGCCCAGCAACTA
TACCGTCTTCAGTACCATCAACATGATCATATTCCAGGCACTCGCCTTCC
TGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGATCCGGGCGCTGTA
CCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGATGGGCTACCGCGA
GGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGTATCAAGCCGGAAC
GAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCGCAAGATGGATCAC
CACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACAATCAAAAGTACTT
TGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTGCACACGCTCTTCC
TGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGACTGGCGCACCTGC
TCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGCTTTTTCTCACCTT
TGAGGGCCTTATGTTCGGCATATTCACCATCATCATGCTGGCCACTCAGC
TGACGGCTATCCTAAACGATCAGACGGGCATCGAACAGCTGAAGAAGGAG
GAGGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCATCCAGTCGGTGTT
CGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACGGAGCCCTCGTGCC
GCACAAGATTCAACTCGCACTTCTATTCAGTCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCAT
AATCATAATCACACTAGCCTAGAGATCCTGTCATGACTAGTGCTGATCTC
ACCAATAAAAAACGCCCGCGCACGACGTTCTGAACAATTCGAATGGAGTT
CTGAGTCATACTGATCTATCAAAGGATCAGCGAGTCGATCAATAGCCCCG
CCTGCACTATCGAACGTTATCTAGCATCGCCAATGGAGCATCACAAAGCA
GAGTACCTGAATCCCACGG
UFO01344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8314-RA | 1280 | CG8314-RA | 140..1019 | 53..932 | 4400 | 100 | Plus |
| CG5880-RA | 1526 | CG5880-RA | 587..662 | 454..529 | 200 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15990858..15991147 | 342..53 | 1450 | 100 | Minus |
| 2R | 25286936 | 2R | 15990452..15990674 | 563..341 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 15990169..15990382 | 777..564 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 15989944..15990100 | 932..776 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:23 has no hits.
UFO01344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:18 Download gff for
UFO01344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 140..1019 | 53..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:09 Download gff for
UFO01344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 136..1015 | 53..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:17 Download gff for
UFO01344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 140..1019 | 53..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:17 Download gff for
UFO01344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15989944..15990099 | 777..932 | 100 | <- | Minus |
| 2R | 15990170..15990382 | 564..776 | 100 | <- | Minus |
| 2R | 15990452..15990673 | 342..563 | 100 | <- | Minus |
| 2R | 15990859..15991147 | 53..341 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:18 Download gff for
UFO01344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11877675..11877887 | 564..776 | 100 | <- | Minus |
| arm_2R | 11877957..11878178 | 342..563 | 100 | <- | Minus |
| arm_2R | 11877449..11877604 | 777..932 | 100 | <- | Minus |
| arm_2R | 11878364..11878652 | 53..341 | 100 | == | Minus |
