UFO01346.5prime Sequence
1236 bp (1063 high quality bases) assembled on 2008-08-22
> UFO01346.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCCACATACCCAGCAA
CGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAACCTGGAGGAGGAGT
TCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTATGTGGCCATGGAC
ACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCGAGTTCCGCTCCAC
GGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTCGATCTGCTGCGGA
TTATCCAATTGGGCCTTACCTTCATGGACGACGATGGAAAGACACCACCC
GGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACCTGAGCGAGGACAT
GTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCCGGAATTCAGTTCA
AGAAGCACGAGGAGGATGGCATCGATCCCATCGACTTCGCCGAACTGCTG
ATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGTGGCTGTGCTTCCA
CTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTCACCGATCAGAACC
TGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCACATCTACTTTCCC
AACATCTTCGACATCAAGTATCTGATGAAGTCGTGCAAGAACCTGAAAGG
CGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGGCGCGTGGGCCCCC
AGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCATGGCCTTCTTCAAA
ATGCGTGAGATGTTCTTCGAGGACAACATCGACCATGCGAAGTACTCCGG
ACACCTGTACGGCCTGGTACCTCCTTCATCGTCAATGGCACCAACTTCCA
CGACAGCAACGGTGAGACGACAGCGCTTCAGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATAATCATAATCATATC
ATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTGGATCCAC
CATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCGAATGGAGTTC
TGAGTCATAATGATCTATCACGGATCAGCGGCTCGAATCAATAGGCGGCT
GCATTATGAATACTGGTAAATCTAGACTCGGCAATGAACTTCCAACGCGA
GTACCTGAATGCGAGGGACGACCTGTCCCTGGCAAT
UFO01346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pop2-RB | 1893 | CG5684-RB | 539..1417 | 54..930 | 4345 | 99.8 | Plus |
| Pop2-RA | 1688 | CG5684-RA | 334..1212 | 54..930 | 4345 | 99.8 | Plus |
| Pop2-RC | 1827 | CG5684-RC | 473..1351 | 54..930 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12000273..12000692 | 809..390 | 2100 | 100 | Minus |
| 3L | 28110227 | 3L | 12000750..12001087 | 391..54 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 11998874..11998998 | 930..808 | 525 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:09 has no hits.
UFO01346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:47 Download gff for
UFO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RC | 473..1351 | 54..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:05 Download gff for
UFO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 318..1210 | 42..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:27 Download gff for
UFO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RC | 473..1351 | 54..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:27 Download gff for
UFO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11998874..11998996 | 810..930 | 98 | <- | Minus |
| 3L | 12000273..12000690 | 392..809 | 100 | <- | Minus |
| 3L | 12000750..12001112 | 22..391 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:47 Download gff for
UFO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11991974..11992096 | 810..930 | 98 | <- | Minus |
| arm_3L | 11993373..11993790 | 392..809 | 100 | <- | Minus |
| arm_3L | 11993850..11994212 | 22..391 | 95 | -> | Minus |
