UFO01348.5prime Sequence
1176 bp (976 high quality bases) assembled on 2008-08-22
> UFO01348.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGACGATGAGTACAAACAACTGCGAGAGCATGACCTCGTACTTCACC
AACTCGTACATGGGGGCGGACATGCATCATGGGCACTACCCGGGCAACGG
GGTCACCGACCTGGACGCCCAGCAGATGCACCACTACAGCCAGAACGCGA
ATCACCAGGGCAACATGCCCTACCCGCGCTTTCCACCCTACGACCGCATG
CCCTACTACAACGGCCAGGGGATGGACCAGCAGCAGCAGCACCAGGTCTA
CTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGGGGTCATGCCCCAGG
CGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGCAACAGCAGCAGCAG
CAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCGCAGCAGGCCCCACA
GCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACAGGTGACACATCCGC
AGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCTGCAAGTTGCAAGCG
GCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGATCGCCTCCGCTGGT
GGATCAAATGTCCGGTCACCACATGAACGCCCAGATGACGCTGCCCCATC
ACATGGGACATCCGCAGGCGCAGTTGGGCTATACGGACGTTGGAGTTCCC
GACGTGACAGAGGTCCATCAGAACCATCACAACATGGGCATGTACCAGCA
GCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCAGGCATGATGCACCA
GGCCAGGGTCCTCCACAGATGCACCAGGGACATCCTGGGCAACACACGCC
TCCTTCCCAAAACCCGAACTCGCAGTCCTCGGGGATGCCGTCTCACTGTA
TCCCTGGATGCGAAGTCAGTTTGGTAAGTGTCAAGGAAAGCAGCTTTCTA
GACCATTCGGTTGGCGCGCGGGCCCAGTAGTGTCATAATCATATCATAAT
CATTATCATATCACACTAGCTAGAAGATCTGGTCATGACTAGTGCTGATC
TCACCAATAAAAAACGCCGCGCACGACGTCTGACATCGATGAATCTGGAG
TCATACTGGATCTATTACACGATCCAGCGAGGCTGATCCATAGCCTCGAC
TGGCCACTCATCGCGAAAACCCTGGT
UFO01348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1731..2621 | 53..940 | 4365 | 99.6 | Plus |
| Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 53..935 | 4340 | 99.5 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2405 | 53..935 | 4340 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 673..53 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908508..6908740 | 940..711 | 1000 | 98.3 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 714..670 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 379..518 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 380..516 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 380..515 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 380..539 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 380..519 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 256..518 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 413..518 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 402..540 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 419..518 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 377..542 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 380..518 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 417..515 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 424..518 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 417..518 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 62..518 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 445..518 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 400..539 | 161 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 449..518 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 413..518 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 393..518 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 393..553 | 115 | 56.2 | Plus |
UFO01348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:08 Download gff for
UFO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 53..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:06 Download gff for
UFO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 53..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:21 Download gff for
UFO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 53..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:21 Download gff for
UFO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908508..6908738 | 713..940 | 98 | <- | Minus |
| 3R | 6908873..6908911 | 674..712 | 100 | <- | Minus |
| 3R | 6909290..6909922 | 46..673 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:08 Download gff for
UFO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734230..2734460 | 713..940 | 98 | <- | Minus |
| arm_3R | 2734595..2734633 | 674..712 | 100 | <- | Minus |
| arm_3R | 2735012..2735644 | 46..673 | 99 | <- | Minus |
