UFO01349.5prime Sequence
1193 bp (950 high quality bases) assembled on 2008-08-22
> UFO01349.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCTACTCGCGACT
TTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCGGCGGCACCCA
GGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGACGGAGCTGGCC
AGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCTCCGCATCCTC
CTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTACGAGGAGGCCC
TGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCTGGACGCCGCC
CCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGGACACGCACGC
CGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCTCCATTCCTGT
CGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGCAGCCGCTGCT
GCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACCCGTTCACTAT
GGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAGGACGCACAGT
TAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTTCAAGTGCCCC
AACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAGGGGCCACATCCG
CATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAACACATGCGGCA
AGACCTTCACCCGCAATGAGGAACTGACGCGTCACAGCGAATCCACACCG
GACTGCGGCCGTATCCTTGCAGTGCCTGCGGAAAGGAGTTTGGCCGACGC
GACCACTTAAAGAAGCACATGACGACGCACATGCCGCAGGACGCCAGCTG
GGCCCGTCCATCGTCGTGCCCATGTACTCATACCTGTATGCTACGCAGCT
TCTAGACCATCGTTTGGCGCGCGGCCCAGTTAGTGACATATCTAATCATA
TCTTATCTATCACGACTAGCTAGAATGCTGTCATGACTAGTGCTGCATCC
CACAATTAAACGGCGCGCACGACGTCTGGACCATCCGATGATCTGAGTCT
TACTGACTTACCAGGATCAGCACTCGAATCACGTAGCGACTGCAATTCGA
ACGGTATCTAGCCTCGCCGACTGGAGCTCAAACCGGAGGCGTA
UFO01349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hkb-RA | 1567 | CG9768-RA | 144..1029 | 57..940 | 4305 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4345848..4346503 | 712..57 | 3265 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4345553..4345784 | 940..711 | 1000 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6862 | 200..325 | 169 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2529 | 114..332 | 131 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2448 | 241..332 | 115 | 59.8 | Plus |
UFO01349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:30 Download gff for
UFO01349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-RA | 144..1038 | 57..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:12 Download gff for
UFO01349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-RA | 148..1042 | 57..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:41 Download gff for
UFO01349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-RA | 144..1038 | 57..948 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:41 Download gff for
UFO01349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4345544..4345783 | 712..948 | 96 | <- | Minus |
| 3R | 4345849..4346503 | 57..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:30 Download gff for
UFO01349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 171266..171505 | 712..948 | 96 | <- | Minus |
| arm_3R | 171571..172225 | 57..711 | 99 | | Minus |
