UFO01350.5prime Sequence
1196 bp (1026 high quality bases) assembled on 2008-08-22
> UFO01350.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGATGCATATCAAAAGCCTGCCCCATGCCCATGCCGCTGCTACGGCG
ATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCCCAGCCCCAAACCAC
CATAGCAAACAATAATAACAATGAGACGGTCACCCAGGCCACGCATCCGG
CTCACATGGCGGCGGTTCAACAGCAGCAGCAACAACAACAGCAACAGCAG
CAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGCGGACCACCCTCTGT
GCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCAGATGCACTTAAGCG
GGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAGCGGCTATGGCAGCT
GCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAACAACAGCAACCGCC
GCCACCAACTTCACATCTGACGCACCTGACCACGCATAGTCCGACAACGA
TCCACAGTGAGCATTACCTGGCCAATGGACATAGCGAGCATCCCGGAGAG
GGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGCGAGCCGGAGAAACC
TTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACAGCTAAGCACACTGA
CCAACCATGTAAAGATCCATACTGGCGAGAAGCCCTACAAATGCAACGTT
TGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATCTGAAGAT
CCATACGGGCGAGAAGCCTTATAACTGCAACTTTTGTCCCAAGCATTTTC
GACAACTGAGCACGCTGGCCAACCATGTGAAGATCCACACGGGTGAAAAG
CCTTTTGAGTGTGTCATCTGCAGAGCAGTTCCGACAGTCCAGCACGCTCA
ACAACACATAAAAATACACGTCATGACAAAGTCTACGTTCCTGTAGATCA
AACAGAGAGATGAGGGGCAGCTTTCTAGACATCGTTTGGCGGGCGGGCCC
AGGTAGTGGTCATATCATATCATAATCATATCATAATCCAACTAGCTAAG
AGATCTGTCATGACTATGCTGATTCTCACAATAAAAACGCCGCGCACGAG
CGTCTGACATCGATGGATTGAGTATACTGATCTTCACGGATCACGGACTG
ATCATTCGCCGCTGCCATATCGAACGGGTGAATCTAGAATTGGCCC
UFO01350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aef1-RD | 2684 | CG5683-RD | 475..1399 | 52..967 | 4410 | 99 | Plus |
| Aef1-RB | 2579 | CG5683-RB | 370..1294 | 52..967 | 4410 | 99 | Plus |
| Aef1-RC | 2622 | CG5683-RC | 413..1337 | 52..967 | 4410 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21435219..21436013 | 52..846 | 3975 | 100 | Plus |
| 3L | 28110227 | 3L | 21436072..21436178 | 842..944 | 355 | 95.3 | Plus |
| 3L | 28110227 | 3L | 21435814..21435937 | 731..854 | 215 | 78.2 | Plus |
| 3L | 28110227 | 3L | 21435898..21436014 | 647..763 | 195 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:26 has no hits.
UFO01350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:20 Download gff for
UFO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 403..1337 | 38..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:14 Download gff for
UFO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RB | 349..1283 | 38..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:18 Download gff for
UFO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 403..1337 | 38..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:18 Download gff for
UFO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21436073..21436206 | 843..967 | 93 | | Plus |
| 3L | 21435209..21436009 | 38..842 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:20 Download gff for
UFO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21429173..21429306 | 843..967 | 93 | | Plus |
| arm_3L | 21428309..21429109 | 38..842 | 99 | -> | Plus |
