UFO01351.5prime Sequence
1212 bp (1035 high quality bases) assembled on 2008-08-22
> UFO01351.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGAGCGTGGAGGAGGAAGTGTTTCGAATCCAAAAGAAGATGAG
CAAGATGGCCAGCGACGGCACAGGACAGGATCAGGCTCTGGACCTGCTGA
AGGCCCTGCAAACGCTTAACATCAATCTCGACATTCTGACCAAAACGCGC
ATCGGCATGACCGTAAACGAGCTGCGCAAGAGTAGCAAGGACGACGAGGT
GATCGCTCTGGCCAAGACGCTGATCAAGAACTGGAAACGATTCCTCGCCA
GCCCGGCGCCAACCACACCGAACAACAGCTCCGCTAAGGAGGGCTCCTCC
AACAACAGCAGTGCCTCGAAGTCCACCAGTGCCGCCAAGTCGTCGTCGTC
AATCTCCGGCAAGGATAAGTCCAGTTCATCCAGCTCATCCAAGGATAAAG
AGAAGAAAGGCTCGACATCCTCGTCACAGACCTCGTTTCCCTCCGGCGGC
ATGACAGATGCGGTCCGCATCAAATGCCGCGAAATGCTGGCCACCGCACT
GAAGATTGGTGAAGTGCCCGAAGGATGCGGTGAGCCGGAGGAAATGGCCG
CCGAACTGGAGGATGCCATTTACTCCGAGTTCAATAACACGGATATGAAG
TACAAGAATCGCATTAGGTCACGCGTGGCCAATCTGAAGGACCCCAAAAA
TCCTGGATTGCGAGGCAACTTTATGTGCGGCGCCGTCACTGCCAAGCAGC
TGGCCAAAATGACGCCGGAGGAGATGGCCAGCGATGAGATGAAGAAGCTG
CGCGAGAAGTTCGTCAAGGAGGCCATCAACGATGCCCAGCTGGCCACCGT
GCAGGCACCAAGACCGATCTCCTCAAGTGCGCCAAGTGCAAGAGCGCAAC
TGCACTACACAGCTGCAGACTCGTTCGCGATGACCTATGACCACTTCGTC
ATGTGCACGAGTGCGCACGATGGAGTCTGCGCAGCTTTCTAGACATCGTT
TGGCGCGCGGCCCAGGTAGTGTCATATCATATCATATCATATCATATCAC
ACTAGCTAGGAGATCTGGTCATGACTATGCTGATTCCCACAATAAAAACG
CCGGGCGCACCGAGCCGTCGGACCATTCGAGTGATCTGAGTCATACGGAT
CTCACGATCACGGAGTCGAATCCATAGCCGCCTGCATTATGCGAAACGGT
GGAATTCTTAGT
UFO01351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIS-RB | 1773 | CG3710-RB | 260..1178 | 57..965 | 4355 | 98.9 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 260..1178 | 57..965 | 4355 | 98.9 | Plus |
| CG8117-RA | 770 | CG8117-RA | 323..439 | 754..869 | 245 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15059558..15060366 | 926..123 | 3830 | 99.4 | Minus |
| 2L | 23513712 | 2L | 15060432..15060498 | 123..57 | 335 | 100 | Minus |
| X | 23542271 | X | 15644544..15644660 | 754..869 | 220 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:34 has no hits.
UFO01351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:05 Download gff for
UFO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1198 | 57..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:15 Download gff for
UFO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 256..1194 | 57..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:08 Download gff for
UFO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1198 | 57..980 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:08 Download gff for
UFO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15059494..15060366 | 123..980 | 98 | <- | Minus |
| 2L | 15060433..15060498 | 57..122 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:05 Download gff for
UFO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15059494..15060366 | 123..980 | 98 | <- | Minus |
| arm_2L | 15060433..15060498 | 57..122 | 100 | == | Minus |
