UFO01354.5prime Sequence
1237 bp (1103 high quality bases) assembled on 2008-08-22
> UFO01354.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGATTCTGTGACAAGTGAACAGAGTGAAAATAACAACAATAAA
GCGGGCGCAATAAATAACAATATTAATAGTGGTATTGAAAGAGCCGCGGG
CAATATGAACACCACCGCCATGTTGATGCATCACCAGCAGCAGCAGCAGG
CAGCCGCAGCAGCGGCAGCCGCAGCAGCCCAGCAGCAACAGCAGCAGCAC
AATGGACGCGACGGTAGCAACAGTTCGCGTGGAGCCAACGAGGATCGTCC
AAATGGACGGAGCTCGCACACAGGACGAGGATCCAGTTGCTCACCGGCCA
GTTCACCAAGTCGCCATCCCAGTGCCGTCAGTCCGGTGAGCTCCCTCAAC
CACTCCATGATGCAGCAGATGCAGCAACAGCAGCAACAACAGCAGCAGCA
ACAGCAGCAGCAGCAACACCATCAGCTCAGCCCCCCGCCACATGGAATGC
CATCGGGCAACGGACTGCCGACGGGCCTACCGCCCAGAATGCCCCATGGA
CTGCCGCCCCATTCGCTGGGGCTCCTCAACTCCCTGCAGATGATGCACCA
TGCCTCCCCCTTGGAACTGATGGCCGCCGCCCATCACCATGTGCCTCCAA
GGTCGTACAACTCACCGCCGCCGATCTCCACCTCGGATCCCAGTGCCAAT
GAGTGCAAGCTGGTGGAGTACCGGGGTCAGAAGGTCGCCGCATTCATAAT
TAGCAACGAAACGATGCTCTGCCTGCCGCAGCCTTCGAGCTCTTCCTGAA
GCACTTGGTCGGCGGTCTGCATACGGTTTATACCAAACTAAAGCGCCTTG
ACATCGTACCGCTCGTCTGCAATGTGGAACAGGTGCGCATATTACGCGGC
TTGGCGCCATCCAGCCGGGCGTCAATCGCTGCAAGTTGCTCTGCTGCAAG
GACTTCGACATCCTCTACAGGGACTGCACCACGGCCAGATGCCTATCGAT
CAGCCACCAGAAAGGGCAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGC
CCAGGTAGTGGTCATAATCATAATCATAATCATAATCATAATCACACTAG
CCTAAGAGATCTGTCATGACTAGTGCTTGATTCTCCACAATAAAACGCCC
GGCGCACGGAGCGTTCTGAACAATCGATGGAGTTGGAGTCATTAACTTGA
TTCTATCACACGGAATCAGCGAGAGACGTATCATTAT
UFO01354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-RF | 4955 | CG4952-RF | 628..1589 | 56..1014 | 4720 | 99.6 | Plus |
| dac-RB | 4982 | CG4952-RB | 628..1589 | 56..1014 | 4720 | 99.6 | Plus |
| dac-RD | 4961 | CG4952-RD | 628..1589 | 56..1014 | 4720 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16483808..16484742 | 988..56 | 4560 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:53 has no hits.
UFO01354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:11 Download gff for
UFO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 625..1589 | 49..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:17 Download gff for
UFO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RB | 611..1580 | 49..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:20 Download gff for
UFO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 625..1589 | 49..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:20 Download gff for
UFO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16481524..16481551 | 989..1015 | 96 | <- | Minus |
| 2L | 16483808..16484745 | 49..988 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:11 Download gff for
UFO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16481524..16481551 | 989..1015 | 96 | <- | Minus |
| arm_2L | 16483808..16484745 | 49..988 | 99 | | Minus |
