UFO01355.5prime Sequence
1235 bp (1085 high quality bases) assembled on 2008-08-22
> UFO01355.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACTTCTCCATCGATGC
CATCTTGGCCAAGAAACCCATCAACACCGCAACTCAACCCATCAAAACCG
AACCGGTGCATCATCATCATCAGTACGTTCATCCGTACTCCAATTCCGAT
GGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCAGCAGGACCAGCAC
ACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAAAACAATGACAAGC
TCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCTGGACGAGGACCAG
GAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAATGACCGCCGGCAG
CGATACCAAGAAACCGCCATACAGCTACAACGCCCTCATCATGATGGCCA
TCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGGCATCTATCAGTAT
CTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGCGGGGCTGGCAGAA
CTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTCACGAAGATTCCCC
GCAGCTACGATGATCCCGGCAAGGGCAACTACTGGATCCTGGACCCCTCG
GCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGCTGAGGCGCAAGAA
TCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGTCAGGCCATATTCT
CGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGCTTCCAGCTACGGA
TACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCGCCCTGTACCAGCG
CATGAATCCCGCTGCCTATCAGCTGCCTATCAGCAGATGCAGTACCAGCA
GGCTCCTCAGCCCACCATCATCAGGCGCCCATCCCGCCAGATGCAGGCTA
TCCACACATTGACGCCGAGTTGTTTCAGCGCATGCAGTTCTTTGGCAGTT
TCCATCCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGT
AGTGGTCATATCATATTCATAATCATAATCATAATCCCACTAGCCTAAGA
GATCTGTCATGACTATGCTTGGATTCTCACCAATAAAACGCCCGGGCGGC
CACCGAGCGTCTGAACAATTCGAGTGAATCGAAGTCATTACTGATTCATC
ACACGGATCCACGCGACGCTCGTAATATACAATAT
UFO01355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slp1-RA | 1425 | CG16738-RA | 110..1075 | 54..1010 | 4605 | 99.1 | Plus |
| slp2-RA | 2346 | CG2939-RA | 905..1217 | 420..732 | 385 | 76.8 | Plus |
| croc-RA | 2347 | CG5069-RA | 563..725 | 481..643 | 245 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3825784..3826749 | 54..1010 | 4400 | 99 | Plus |
| 2L | 23513712 | 2L | 3837744..3838016 | 420..692 | 375 | 75.8 | Plus |
| 3L | 28110227 | 3L | 21475755..21475917 | 643..481 | 245 | 76.7 | Minus |
| 3L | 28110227 | 3L | 4020394..4020483 | 509..598 | 240 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:16 has no hits.
UFO01355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:21 Download gff for
UFO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 101..1083 | 44..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:18 Download gff for
UFO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 96..1078 | 44..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:52 Download gff for
UFO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 101..1083 | 44..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:52 Download gff for
UFO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3825775..3826757 | 44..1018 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:21 Download gff for
UFO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3825775..3826757 | 44..1018 | 98 | == | Plus |
