UFO01356.5prime Sequence
1199 bp (1028 high quality bases) assembled on 2008-08-22
> UFO01356.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGACCTGCGTAAACTGTGCCGCATTTGCTTCGTGGACAGCGCTTCGG
TGGATATACGGGAGCACAGGAGCGGTGGCAGTTCGGATCAGACAGTCCTC
CAGCTGATAGAAGCCATGTTCGGCTGGAACATAGCACTTAATCTTACTGA
GGAGCTGCCCATGATCTGTAATGATTGCTTGGAAGATTGCCTGCAGCAGT
ACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAGCAGCTACTGCAGCTC
TACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAAGATGGACGCAACGGA
GGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCGAGATACTGGAGGAAT
TCAGGAGGATACCACTGGATTATGTGGTTTTAGACCCCGATCGTCCTACA
GAAACAAGACAAACGAGGAGAAGGACGGATAGCTGTACGAAACCCTCTCA
AAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCGAGTTTTTACCTGCCA
CCACAGCCCAACCACGACTGGATCTATCCGACTCTCAGCTGGAGCAACTG
GAATCCCCAGCATACGAGATGCGCACCGTGGACTATGCTGCCGTCGAACT
GAAACACTACAACCTGGACGAGTACAACGAGGCCAATCGCCTGCTGGACG
TGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGCCAGTACTGCCCACTG
GCTTATGCCTCGCCTCAATATCTGAAAACCCACGTGCGCAATTCGCACGT
CTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTCGCGATCTCAATGAGC
ATATTCGGCAGAAGCATCCGCATCACCAGTGCGTTGTCTGCTCCAACACT
TTAGTACCAGTAGCATCTGAGGGCTCACTTAAAGAAATTCATGGAGTCAG
CTGCCCGCACAGTGCACTGCTGATACAGGCAGCAGTCAGATCGGATATCC
GCGCTCAGCAGCTTTCTAGACATCGTTGGCCGGGGGCCAGGTAGTGGTCA
TAATCATATTCTATCTAATCTATTCCCACTAGCTAGGAGATCTGTATGAA
CTATGCTGATTCCCACATAAACGCGGCGCACGACGTCTGGAACAATCAAT
GATCAGTCTTACGGATCTATCCACGAGATTCAGCCGACCTGTAATCATT
UFO01356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13123-RA | 1094 | CG13123-RA | 101..1070 | 51..1007 | 4525 | 98.7 | Plus |
| CG13123-RC | 1087 | CG13123-RC | 101..1063 | 51..1007 | 4410 | 97.9 | Plus |
| CG13123-RB | 996 | CG13123-RB | 45..972 | 93..1007 | 4315 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9792039..9792828 | 962..177 | 3750 | 99.5 | Minus |
| 2L | 23513712 | 2L | 9792881..9793007 | 177..51 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:08 has no hits.
UFO01356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:11 Download gff for
UFO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..1042 | 51..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:19 Download gff for
UFO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 91..1032 | 51..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:18 Download gff for
UFO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..1042 | 51..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:18 Download gff for
UFO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9792013..9792827 | 178..983 | 98 | <- | Minus |
| 2L | 9792881..9793007 | 51..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:11 Download gff for
UFO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9792013..9792827 | 178..983 | 98 | <- | Minus |
| arm_2L | 9792881..9793007 | 51..177 | 100 | | Minus |
