UFO01360.5prime Sequence
1212 bp (1045 high quality bases) assembled on 2008-08-22
> UFO01360.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGTAACGACGATCATCGACGGCGGAAGACACCCTGCGGATTTTGTA
TGGCAGTCTTCAAATGGATACCAGTGCTATTTATCACCGCGGTAATAGCT
TGGTCCTATTACGCTTATGTGGTGGAGCTATGCATCCGCAACTCGGAGAA
CCGCATTGGTATGATCTTCATGCTTCTGTTCTACCACCTCTTCCTCACCC
TGTTCATGTGGTCGTACTGGCGCACCATAATGACCTCCGTAGGCCGAATA
CCAGATCAATGGAGGATACCGGATGAGGAAGTGTCGCGACTTTTCCGAGC
CGACAGCCCGGACACCCAGAAACGCATTCTTAACAACTTTGCGCGCGATT
TGCCAGTAACGAATCGCACAATGAATGGTTCGGTGCGGTTCTGCGAAAAG
TGCAAGATCATCAAGCCAGACCGAGCTCACCACTGTAGTGTGTGCAGTTG
CTGCGTACTGAAGATGGATCACCACTGCCCCTGGGTAAACAACTGCGTTA
ACTTTTACAACTACAAGTACTTCGTGTTGTTCCTGGGCTATGCTCTTGTC
TACTGCCTGTATGTGGCTTTTACCTCGCTACACGACTTTGTCGAGTTCTG
GAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAATGGGTCGTTTTCACA
TCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCCATTAGTTTGGTGAGT
TTATTTGGCTACCACATCTACCTTGTGCTGGTGAATCGCACGACATTGGA
GTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCCCCGATAAGAATGGTT
ATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTATTTGGTGACGACTGG
CAATACTGGTTCCTGCCCGTGTTTTCGAGCTTTGGCGATGGCAAACATTT
CCGATTCGACATATGGAAGAGACACGGAATTTTTGCTAGGATATCACAGC
GATACGCGCATCGAGTGGAGAGACTTTCTGCAGAGCGCGATTCAGACTCG
ATTCCAGCAGCTTTCTAGAACATCGTTTGGCGCGCGGCCCAGTTATTGTC
TAATCTATCTAATCTATCTAAATCAACTAGCTAGGAATTCTGTATGAACA
TGCTGATTCCCCATAACGTGCGGCGCACCGACTTCTGAACAATTCATAGA
GATCTCGGTGGG
UFO01360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1407-RD | 1857 | CG1407-RD | 365..1378 | 52..1056 | 4830 | 99 | Plus |
| CG1407-RB | 1857 | CG1407-RB | 365..1378 | 52..1056 | 4830 | 99 | Plus |
| CG1407-RA | 2238 | CG1407-RA | 365..1242 | 52..929 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10031579..10031827 | 664..416 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 10032393..10032529 | 188..52 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 10031284..10031419 | 799..664 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 10031085..10031215 | 929..799 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 10032214..10032335 | 309..188 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 10032019..10032125 | 416..310 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 10028969..10029059 | 1016..928 | 340 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:06 has no hits.
UFO01360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:34 Download gff for
UFO01360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 356..1383 | 42..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:11 Download gff for
UFO01360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 351..1378 | 42..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:57 Download gff for
UFO01360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 356..1383 | 42..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:57 Download gff for
UFO01360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10028917..10029057 | 930..1062 | 91 | <- | Minus |
| 2R | 10031085..10031214 | 800..929 | 100 | <- | Minus |
| 2R | 10031284..10031419 | 664..799 | 100 | <- | Minus |
| 2R | 10031580..10031826 | 417..663 | 100 | <- | Minus |
| 2R | 10032019..10032125 | 310..416 | 100 | <- | Minus |
| 2R | 10032214..10032335 | 188..309 | 100 | <- | Minus |
| 2R | 10032394..10032538 | 42..187 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:34 Download gff for
UFO01360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5919899..5920043 | 42..187 | 97 | | Minus |
| arm_2R | 5916422..5916562 | 930..1062 | 91 | <- | Minus |
| arm_2R | 5918590..5918719 | 800..929 | 100 | <- | Minus |
| arm_2R | 5918789..5918924 | 664..799 | 100 | <- | Minus |
| arm_2R | 5919085..5919331 | 417..663 | 100 | <- | Minus |
| arm_2R | 5919524..5919630 | 310..416 | 100 | <- | Minus |
| arm_2R | 5919719..5919840 | 188..309 | 100 | <- | Minus |
