UFO01364.5prime Sequence
1209 bp (1051 high quality bases) assembled on 2008-08-22
> UFO01364.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAGCCGAAAGAACGGAAACCAGGACACCTTTCCCAAGACGGAGAAGA
TGCAGCGCTACTACGCGGAGCGCGAGACCACAGGACCCGAGTTCGACGAT
CGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCATCTATGATGTCAGCCA
TCCGCACTATCGCCGTAATCCGGTGCGGGTGGACATATGGGATCGCATTG
CCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAAACCAAATGGAAGAAC
ATACGATACAACTATCTGCAGGAGGTCAAGGCGATTGAGACGGGCCAGGC
GAATCCGAACGTACGCAAGCGGCGCTTCACTGAGGATCTATCCTTTCTGC
AGAACACGGCCCAAACCTACAATGTGAAGAAATCCCAGAGCTACGTGGCC
CAACAGAATGGAATGGGAAGTGACAACGACAGCAATAGCTTTTTGTATCC
CGATCCGGAGCACCTAAAGATCGACGCCTCCGAGGGCTACGACATCATCG
AGCTGGACAACAGCGACGATGGCTCAAATAGCGACGACAACGAGATTGTG
CCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCAGCAATTATCCCTGCC
GACGACACTGAACGGCACCAGCAGCAGCAATCACAGCCACGAACATGACC
AAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACGCCGATGGTTGTAATG
GGCAATGGCTATGGCCAGGAGGTGCATCTAGAACAGCAGCAGACACAGGA
GCAAAAGCCGTTCAAGATAGCTCGCTGTCCAACGGAGAAGTGACCATTGA
GCCCATTTACAAGCCTGCGGCTATCAGACGCGCATTACCCAGCGATTTCT
GACCAATCCCTTCAGCGCAAGGCAACCCAAGCGCGCTTCAGACCCAAGTG
ACGTCGTCTCACGATCCCATCGAGCTCTACTGCCTATCGCTGTGACACAC
TGCGCAGCATGCGGAGATCGACGGGAGCGGTCAGTCGAGTCGCAACATTC
TGAGACGCAGTACAGACGAGCCAGCTTTCTAACATCGTTGGCGCGCGGGC
AGTATTGCTATCTATCTAATCTAACCTATCCACTAGCTAGGAATCTGCTG
ACATGCTGATCCAATAAACCGGGACGAGCCGAAATCATGATTGGAGCTAT
CGGAATCTT
UFO01364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip3-RA | 1471 | CG12767-RA | 180..1201 | 48..1053 | 4715 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18129179..18129936 | 272..1020 | 3400 | 98.4 | Plus |
| 2R | 25286936 | 2R | 18128975..18129101 | 145..271 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 18128673..18128770 | 48..145 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1064..1109 | 766..811 | 113 | 71.7 | Plus |
UFO01364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:53 Download gff for
UFO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 171..1186 | 37..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:28 Download gff for
UFO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 165..1180 | 37..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:25 Download gff for
UFO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 171..1186 | 37..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:25 Download gff for
UFO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18128664..18128770 | 37..145 | 95 | -> | Plus |
| 2R | 18128976..18129101 | 146..271 | 100 | -> | Plus |
| 2R | 18129179..18129961 | 272..1040 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:53 Download gff for
UFO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14016169..14016275 | 37..145 | 95 | -> | Plus |
| arm_2R | 14016481..14016606 | 146..271 | 100 | -> | Plus |
| arm_2R | 14016684..14017466 | 272..1040 | 98 | | Plus |
