UFO01365.5prime Sequence
1204 bp (1021 high quality bases) assembled on 2008-08-22
> UFO01365.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGACCAAATGCTAAGCCCCAACTTCTCGATTCCGAGCATCGGAACGC
CGCTCCACCAGATGGAAGCGGACCAGCAGATAGTGGCCAATCCTGTGTAC
CATCCTCCGGCTGTATCGCAGCCGGATTCGTTGATGCCGGCACCCGGTTC
CAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGTCGGACGCCAGTGGGG
GATCAGGTCTCTTTGGCCACGAACCATCGCTCCCGCTGGCGCACAAACAA
ATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCAGCAGCAGCAGCAACA
GCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGAGCACTCCGCAGTCCA
TGATGCAGCCGCAGACGCCGCAGAGCATGATGGCCCACATGATGCCCATG
AGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGGTGGCGGAGATGCCCT
GAGCAACATCCACCAGACGATGGGCCCCTCCACGCCGATGACACCAGCCA
CACCAGGTTCCGCTGATCCCGGTATTGTGCCACAACTTCAGAACATCGTG
TCCACGGTTAATCTGTGCTGCAAACTGGACCTCAAGAAAATAGCATTGCA
TGCGAGAAACGCCGAGTACAATCCTAAGCGATTTGCGGCTGTGATTATGC
GAATCCGAGAGCCCCGGACCACCGCCCTTATTTTCAGCTCCGGCAAGATG
GTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAGACTGGCAGCGAGAAA
GTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTGCAAAGTTCCTCGACT
TTAAGATTCAAAACATGGTCGGCTCCTGCGATGTCAAGTTCCCCATACGC
TTGAAGGCCTGTGCTGACCCATTGCAACTTCAGCAGCTACGAGCCTGAGC
TATTTCCCGGCTATCTATCGTATGGTGCGACCTCGATCGTGCTCTCATCT
CGTGTCGGAAAGTGTGCTCACTGAGCAAAGGTGCGCAGGAGATCTACGAT
GCTCGACAAGAAATCCCCATTAGAGTCAGAGCAGTCAGCAGCTTTCTAGA
CATCGTGGCGCGCGGCCAGGTATGCTATCTATCTATCTACCAATCACTGC
CTAGGATCTGGCTAACTGCTGATCCCACATAAAGCCGGGGGCACCGAGGT
CTGT
UFO01365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbp-RA | 1387 | CG9874-RA | 191..1225 | 52..1071 | 4805 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21686669..21687452 | 835..52 | 3920 | 100 | Minus |
| 2R | 25286936 | 2R | 21686450..21686605 | 986..835 | 615 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 210..359 | 133 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 211..364 | 129 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 210..360 | 127 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 210..360 | 126 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 329..371 | 116 | 74.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 210..239 | 114 | 86.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 210..233 | 111 | 95.8 | Plus |
UFO01365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:58 Download gff for
UFO01365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-RA | 182..1225 | 42..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:29 Download gff for
UFO01365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-RA | 180..1223 | 42..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:46 Download gff for
UFO01365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-RA | 182..1225 | 42..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:46 Download gff for
UFO01365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21686354..21686605 | 835..1071 | 93 | <- | Minus |
| 2R | 21686670..21687461 | 42..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:58 Download gff for
UFO01365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17574175..17574966 | 42..834 | 99 | | Minus |
| arm_2R | 17573859..17574110 | 835..1071 | 93 | <- | Minus |
