UFO01366.5prime Sequence
1200 bp (1045 high quality bases) assembled on 2008-08-22
> UFO01366.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAGAAGTCC
GTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAACCTTTAA
GCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACCAGCGGC
TGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAGTACCTC
TTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCGCCAGAT
TGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGGAGACCA
AGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTCAAGATC
GTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGAGGAGGA
TGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGTTCCAGT
TCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTCTTCACC
GAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTCCAGCCA
GGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGAGCGAGC
AGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAGGTACTC
GATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATGCCGCTA
CTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACATGGAGG
TGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAACGCTTC
TCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGCCGAGGA
GACGCCCTGATCTGCGAGGTGTGCCACCAGCAGTTCAAGACCAAGCGCAC
TACAGCACACTTGCGCACCCACCAGACGGACCGGCCGCGCTACCCTGCCC
GACTGCAGAATCGTCGTGACAGTACACCCTGAGTGCACAGCGGGTCACAG
CGTCGAGAGCGAGTCGCGAGCAGAGCCCGTCACGTTCTTGCAGCTTCTAA
CATCGTTGGCGCGCGGGTAGTAATGCCTATCTATTCTACCATTATCACTG
CTAGATCGCTAGACATGCTGAATCCTCCAATAAAGCCGGGCGCACCAAAG
UFO01366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 95..1102 | 53..1046 | 4700 | 98.6 | Plus |
| Sry-beta-RA | 1260 | CG7938-RA | 95..1102 | 53..1046 | 4700 | 98.6 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 219..1155 | 124..1046 | 4345 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30039937..30040812 | 124..995 | 4180 | 99.5 | Plus |
| 3R | 32079331 | 3R | 30039813..30039886 | 53..126 | 370 | 100 | Plus |
| 3R | 32079331 | 3R | 30044196..30044333 | 704..841 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 523..558 | 117 | 80.6 | Plus |
UFO01366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:35 Download gff for
UFO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 95..1069 | 53..1018 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:31 Download gff for
UFO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 82..1056 | 53..1018 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:49 Download gff for
UFO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 95..1069 | 53..1018 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:49 Download gff for
UFO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30039813..30039885 | 53..125 | 100 | -> | Plus |
| 3R | 30039939..30040840 | 126..1018 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:35 Download gff for
UFO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25865535..25865607 | 53..125 | 100 | -> | Plus |
| arm_3R | 25865661..25866562 | 126..1018 | 99 | == | Plus |
