UFO01367.5prime Sequence
1233 bp (1067 high quality bases) assembled on 2008-08-22
> UFO01367.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCTGGTGCTGGTACTGCA
ACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAGCACCAGAAGGCCAAG
CACTTCAAATGCCACATCTGCCACAAGAAGTTGTACACCGGACCCGGACT
ATCCATACACTGCATGCAGGTGCACAAGGAAACGGTGGACAAGGTCCCCA
ACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAAATCTTTGGCATGGAC
GGCATTCCCGCCGAGGATCTCAGGGATCACGAACGTCAGAAGAATGGTGG
CAAGTCTGATTCGGACGATGATGAACCGGTGGCCAAAAAGAAAGTAGAAT
ATGCCATGAGTGTACCGCCGCCTATGATGATGCCCCCGAACATGATGCCA
CCGCACATGCTGGGGCAGTACGGCATGGGCATGATGCAGCACATGCCGCC
ACTGCCTCCGTATCCAGTGCCCATGATGCCGCACATGATGCCTCCGCGTC
CTTTGTTTCCAGCCGCCATGGCCACAACATCGGCGGCAGCTGCTGCGGCG
GCGGCCCATCATCACCACGCCGCCGCCATGGCTCAACAAAAGCCAACATT
TCCAGCGTACAGTAATGCTACCATAAGTGCTCCGCCTACCACCAATCATG
CTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCGCCAGATGCTCAGCAA
CACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAGCGGAACTTCCGCTGC
TGCTGTGACCACAAAGATTATGCATCCACAGGAGGACCTGAGTCTGGAAG
AATTGCGCGCGCGCCAACCGAAAATACAAGCACGGTTGGCGGCCGCTTTG
GCTTCACTGGCGAATCCACAAAGTCGCAGAGTCCCAGCAACAATGGTGGC
CCCTCTACGTCGATTCCCACCACTCCGCCGCCCCCGTCGCTGGCGGGATC
TCGCCCACGGGTAGCATAGCAGCAGTGCATGCTACTCGATGTCGTCTCCG
CAGCATGTCGAGGCCAGGAGGGAGTTCTTATCTAAGTATAAGAAACATAG
TCAATTAAGCCAGCCTTCTAGACATTCGTTGGCGCGGGCAAGGTATGCCT
ACCTTAGTCAATCCTAATCTATCACATAGCTAGGGGATCTGGCTGACATT
GCGTGGATTACCACATAAAAGGCGCGGGGGCCC
UFO01367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17912-RA | 1612 | CG17912-RA | 125..1191 | 51..1105 | 4945 | 98.4 | Plus |
| CG17912-RD | 6091 | CG17912-RD | 125..1143 | 51..1061 | 4895 | 99.2 | Plus |
| CG17912-RC | 4400 | CG17912-RC | 125..1143 | 51..1061 | 4895 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16744688..16745057 | 661..1027 | 1700 | 99.2 | Plus |
| 2L | 23513712 | 2L | 16743759..16744067 | 92..400 | 1545 | 100 | Plus |
| 2L | 23513712 | 2L | 16744124..16744385 | 401..662 | 1310 | 100 | Plus |
| 2L | 23513712 | 2L | 16743529..16743573 | 51..95 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:44 has no hits.
UFO01367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:15 Download gff for
UFO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RA | 120..1174 | 45..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:32 Download gff for
UFO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RB | 121..1154 | 45..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:36 Download gff for
UFO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RA | 120..1174 | 45..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:36 Download gff for
UFO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16743524..16743570 | 45..92 | 93 | -> | Plus |
| 2L | 16743760..16744067 | 93..400 | 100 | -> | Plus |
| 2L | 16744124..16744385 | 401..662 | 100 | -> | Plus |
| 2L | 16744690..16745127 | 663..1090 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:15 Download gff for
UFO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16743524..16743570 | 45..92 | 93 | -> | Plus |
| arm_2L | 16743760..16744067 | 93..400 | 100 | -> | Plus |
| arm_2L | 16744124..16744385 | 401..662 | 100 | -> | Plus |
| arm_2L | 16744690..16745127 | 663..1090 | 96 | | Plus |
