UFO01368.5prime Sequence
1214 bp (1071 high quality bases) assembled on 2008-08-22
> UFO01368.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGCACTGCAGACATACGGGGACAAGCCGGTGGCCTTCCAGCTGGAGGA
GGGCGGCGAGTACTACTACGTGGGCTCGGAAGTGGGCAACTACATGCGCC
ACTTCCGCGGCATTCTGTACAAGAAGTACCCGGGAATGACCCGCATCGTC
CTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGTCCGGCCTCAGCTCCCA
CATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCCGTAGAGGTGGATGATA
TCATGGCCGGCAACGATGAAAAGTATCGCGCCGTCTCCGTGAACACTTCC
GATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGAAGCAGCCACAGTATGT
GCCCACGATGCCGAACTCCAGCCACCTGGACGCAGTGCCACAGGCCACGC
CAATCAACCGAAACCGAGTGCACACGAAGAAGGTTCGCACATTCCCGATG
TGTTTCGACGACACGGATCCCACGGCTAGCCTGGAGAATGCGGCGCAGAA
GGAGTGCCTGGTGCCCATTCGACTGGACATGGAGCTAGAGGGTCAAAAGC
TGCGCGACACCTTCACGTGGAACAAGAACGAGAGCATGATTACTCCGGAG
CAGTTTGCCGAGGTGCTGTGCGACGACCTGGACCTCAATCCCCTGCCCTT
TGTGCCGGCTATTGCACAGGCCATCCGACAGCAGATCGAAGCCTTTCCCA
ACGATCCCCCCATCCTCGAGGAGACCTGCGACCAGCGGGTCATTGTTAAG
CTGACATTCACGTGGGCAACACCTCGCTCGTCGACCAGGTCGAGTGGGAC
ATGTCCGAGAAGACAACAACCCCGAGGAGTTTGCCATTAAACTCTGTGCG
GAATTGGGATTGGAGGAGAGTTTGTTACGGCCATTGCCTACAGCATTAGG
GGTCAGCTATCGTGCACTGTCGACGTACGCCTTCAGCGAGGCCCTCTATC
ACGATTGATGTGCCCTTCCGGATCCCAGCGACGCTGACGCATGGGCGTCA
TTCTAGAAAACGCTACGACGCCGAATGGAAAGAAATCCGCGGACCAGACG
CCACCCGCGCGATGGCGACGACTGCATACCCAACTGTGTAGCTTCTAGAC
ACTTTGTTGCCGGCAGTAGGTCTATCTATCATTCAATCTATACACACTAG
CCTAGGAGATTCGG
UFO01368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..1222 | 49..1124 | 4900 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472563 | 323..1053 | 3280 | 98.8 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 49..325 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:17 has no hits.
UFO01368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:51 Download gff for
UFO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..1155 | 40..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:33 Download gff for
UFO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 133..1164 | 40..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:29 Download gff for
UFO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..1155 | 40..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:29 Download gff for
UFO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471058..5471330 | 50..322 | 100 | -> | Plus |
| 3R | 5471825..5472557 | 323..1047 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:51 Download gff for
UFO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296780..1297052 | 50..322 | 100 | -> | Plus |
| arm_3R | 1297547..1298279 | 323..1047 | 98 | == | Plus |
