UFO01370.5prime Sequence
1206 bp (1036 high quality bases) assembled on 2008-08-22
> UFO01370.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGCCGAATCGTAATTGCCGGACTTGCGGCCTGTTCATTTTCTGTTCGA
CGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTAATGCTGCACCAGATC
GAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACCCGGGAACGAGCTGCC
CCCCTTTATTTGCTCACCCTGCGAATTGGACCTGCAGACGGCGATTGCTT
TCCGGGAACGTGTGATTCGAACCCAAAAAACGCTGCAGGAAAGTCCCAAC
CTGGGGAACGCGGAATTGATCGAATCCTTCGCAGTTGGTGTGGAGAAGGA
GATTCAGTACGCTGAAGAGGTCACCGAGATCGAGGTTATAGACCTTCTAC
CCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCGTACGAAATATGTGAG
CAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCAGGAGAAGAAGCTCCG
CAGAAGTACAAAGACCACGCCCACAGTCTTTACCTCCGTTAAGTTTGCGG
ACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGACTCACCGAGGACGAA
GTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGATTGCATATGCGAGCA
GTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCAAGTTGCACCTCCTCC
GACACACCGGCGTAAAGAGCTTTGCCTGTGACCAGTGCTCCCAGCAGTTC
TACACTGCTACGCTTCTGCGGCGCCACCAAGAACTGCATGCGGGGAATGC
TTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACAGCAACGCCAGCGGAC
GCATCCAGCACGAACGCATGCGCCACACGAATGTCAAGCCCTTCACGTGC
AAGGAATGCAATAAAAGCTTTGCCATGAGCGGAAAACTCCGCACGCACAT
GCTGAGTCACACCGGAGTGCGAGCGTTCCACTGCGACTCCTGCAGTCTCT
CGTCGCCGCTCCCACCTGACCTCCCACTATCGCTCAAAGTCACGCCCACA
CTCAGCGCCCAGCGGCACTGACATCTGTGACTGACGTGAGCCAGTACGCA
TGCGACGGCTAGGATGAGCTTACTAGAATGATCTGCAGCTTCTAACATCT
TGGCCTGCAGTCTGGCATCTATCAACCAATCAATCCACACTAGCCTATAG
AGAAAT
UFO01370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1792-RA | 1344 | CG1792-RA | 100..1128 | 52..1070 | 4925 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31616575..31617273 | 172..870 | 3495 | 100 | Plus |
| 3R | 32079331 | 3R | 31616402..31616521 | 52..171 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 31617349..31617459 | 870..980 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 31617549..31617600 | 1003..1052 | 195 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:20 has no hits.
UFO01370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:16 Download gff for
UFO01370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..1132 | 52..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:21 Download gff for
UFO01370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 63..1095 | 52..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:23 Download gff for
UFO01370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..1132 | 52..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:23 Download gff for
UFO01370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31616402..31616521 | 52..171 | 100 | -> | Plus |
| 3R | 31616575..31617272 | 172..869 | 100 | -> | Plus |
| 3R | 31617349..31617459 | 870..980 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:16 Download gff for
UFO01370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27442124..27442243 | 52..171 | 100 | -> | Plus |
| arm_3R | 27442297..27442994 | 172..869 | 100 | -> | Plus |
| arm_3R | 27443071..27443181 | 870..980 | 100 | -> | Plus |
