UFO01371.5prime Sequence
1202 bp (1022 high quality bases) assembled on 2008-08-22
> UFO01371.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATGATGGCT
CCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGCCGGCAG
CGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGCAACAGA
TAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGAAAACAT
ACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACTTTGCGA
AATCAAGGAGAAGACCGTCCTCTCGATTCGCAACACCCAGGAGGAGGAGC
CCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCCGAGGGC
GTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTCTGCGGC
TGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACAATGCCA
TTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAAATATAT
CACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCACCACGCA
TGTCATGAATCTTCTACGCGAACAGAGTCGCACGAGACCCATTACACCAA
AGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGTTCCATA
CAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTAATGATACTTCGTTC
GCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTTCAGCAAGCAGGCAT
CCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCATATCCA
TCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTGGCATCACGGTCTC
GCAAGTATCGAATTGGTTTGGCAACAGCGTATTCGCTATAGAGACATTGT
AAGCACAGAGAGCCATTTGTATGCGGCCAGAGCGCTGGTGCTTCACGTAT
CATGCCGTCCACCCAGCGGACACCACACCCATGATGTCACCCGCTCCGCC
ACAGATTCATGGGCTATCATGGGCTCGGCGAACAACCAGCACACGTACGA
AACGCATGGGGCGCTACAACAATTCTCCTCAGATCAGCCGAGCTTCTAGA
CATCTGCCGGCGGAAGCAACAACAACAAATCTATCCACATAGCCTAGAGA
AT
UFO01371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| exd-RE | 2883 | CG8933-RE | 215..1313 | 52..1117 | 4665 | 96.7 | Plus |
| exd-RD | 2930 | CG8933-RD | 262..1360 | 52..1117 | 4665 | 96.7 | Plus |
| exd-RA | 2386 | CG8933-RA | 231..1329 | 52..1117 | 4665 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15993964..15994283 | 317..636 | 1600 | 100 | Plus |
| X | 23542271 | X | 15993508..15993773 | 52..317 | 1330 | 100 | Plus |
| X | 23542271 | X | 15994345..15994607 | 635..897 | 1315 | 100 | Plus |
| X | 23542271 | X | 15994684..15994730 | 895..940 | 185 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:14 has no hits.
UFO01371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:49 Download gff for
UFO01371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RA | 231..1285 | 52..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:22 Download gff for
UFO01371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RC | 256..1310 | 52..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:28 Download gff for
UFO01371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RA | 231..1285 | 52..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:28 Download gff for
UFO01371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15993508..15993773 | 52..317 | 100 | -> | Plus |
| X | 15994347..15994605 | 637..895 | 100 | -> | Plus |
| X | 15993965..15994283 | 318..636 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:49 Download gff for
UFO01371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15888380..15888638 | 637..895 | 100 | -> | Plus |
| arm_X | 15887541..15887806 | 52..317 | 100 | -> | Plus |
| arm_X | 15887998..15888316 | 318..636 | 100 | -> | Plus |
