UFO01372.5prime Sequence
1187 bp (986 high quality bases) assembled on 2008-08-22
> UFO01372.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTTTTCGGCTGCCAACAACATGCAATATGGCCAGAATATCTCCA
TACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAGCCGCT
GCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGAACGTGACCGGGA
AGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACCAATCCTGGCAGA
CGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCACACCTGCTCTCC
GCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTACTCGGAGACGAT
CAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCACAAATTTGGCCA
GCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAACAACGGTGCGAAT
GGCGGCCACCACAACGGACTGGTGGGCATGGACCATGGCGGTCACATGAC
CAACATGACGGACGCCAACGGAGCGGCGCTGACGAACGGAGCTAGCAACG
GAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGTGGCGCCGGCGCC
GTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAGCGGCGGCACAGG
CACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCACCAAAGGAGAAGA
AGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAGGCGCTGGATGGC
TCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTACCCGGATCGCAG
CCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGCGGCGCTTCGTCT
GCGACATCTGCATGCGGCGCTGAGCGCAAGGACCACCTGACCAGGCACAG
CTCTCCCACATACGGACAGGCCGCATGTGTGCATATCTGCATGAGTCTTC
AGCGCAGGAGCAGCTCACTCTGCACATTGTCATCCATCGGCAGAAGAGCA
TGTTTGCATGATGTGGAAAAGGTTCTATCGCAGATCACTTGCCAGCACAC
CGATCGCCATCGCCGGCGGTCAGTCGGAGGTGTCGGCTACCGTACGGATC
CCGAGCCATGCCCCGTGACGCCACTGCAGCACCGCGTCAGTCCAGCTCGA
CTCTGGCTCGCCAGTAGACCTAATCCTACTATCTAGC
UFO01372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RA | 1522 | CG6930-RA | 151..1208 | 55..1087 | 4670 | 97.5 | Plus |
| l(3)neo38-RL | 2247 | CG6930-RL | 880..1933 | 59..1087 | 4650 | 97.5 | Plus |
| l(3)neo38-RK | 1611 | CG6930-RK | 244..1297 | 59..1087 | 4650 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769372..11770105 | 933..204 | 3455 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11771154..11771300 | 205..59 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:22 has no hits.
UFO01372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:03 Download gff for
UFO01372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 146..1216 | 46..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:24 Download gff for
UFO01372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 146..1216 | 46..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:01 Download gff for
UFO01372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 146..1216 | 46..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:01 Download gff for
UFO01372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11771154..11771303 | 54..205 | 98 | | Minus |
| 3R | 11769370..11770103 | 206..934 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:03 Download gff for
UFO01372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7595092..7595825 | 206..934 | 99 | <- | Minus |
| arm_3R | 7596876..7597025 | 54..205 | 98 | | Minus |
