UFO01373.5prime Sequence
1214 bp (1021 high quality bases) assembled on 2008-08-22
> UFO01373.5prime
GCGGCCGCATTCTTCGTATAGCATACATTATACGAAGTTATCAGTCGACA
TGCTGAATATGGAAAGCGCGGGTGTCAGTGCTGCGATGGCGGGTCTGAGC
AAATCGCTCACCACGCCCTTCTCCATCAACGATATCCTAACGCGCAGCAA
TCCGGAAACACGTCGCATGTCCAGCGTGGACTCCGAACCGGAACCGGAAA
AGCTGAAACCCTCCTCCGATCGCGAGCGATCGATCTCCAAGTCGCCGCCA
CTCTGCTGCCGAGATCTCGGCCTCTACAAGCTGACCCAACCCAAGGAGAT
CCAACCAAGTGCCAGGCAACCCAGCAACTATCTGCAGTATTATGCGGCGG
CGATGGACAACAATAACCACCATCACCAGGCAACGGGCACATCGAACTCC
AGTGCCGCCGACTACATGCAGCGCAAATTGGCCTATTTTGGATCCACCCT
CGCTGCTCCTTTGGACATGAGACGCTGCACCAGCAACGATTCCGACTGCG
ACTCACCACCGCCATTGAGCAGTTCCCCCTCGGAGTCGCCGCTATCCCAC
GACGGCAGTGGATTGAGCCGCAAGAAGCGGTCGCGTGCCGCCTTCAGCCA
CGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGCCCAACAGCGCTACTTGT
CCGGTCCGGAACGCAGCGAGATGGCCAAGAGCCTGCGCCTGACGGAGACC
CAGGTGAAGATCTGGTTCCAAAACCGCCGCTACAAGACCAAGCGCAAGCA
GATCCAGCAGCACGAGGCCGCCCTTTTGGGTGCCAGCAAGAGGGTTCCCG
TCCAAGTCTTGGTGCGAGAGGATGGCAGCACCACCTACGCTCACATGGCT
GCTCCCGGTGCTGGACACGGCCTCGATCCCGCCCTGATCAACATCTACCG
CCATCAGCTGCAGCTGGCTACGGCGGACTTCGCTGCCACAGATGCAGATG
CATTCCCGTACTCTACCCGCACACAGGTGCCGCACCCATACGCACACCCA
GAGTCAGCTTTGTGACTGCATCTCGGCGTCTCATCGCAGTCCATCCCCAT
CCCGGGTGCATGCGTCCCCAGCGAACGCCGTGTCCAGTCCCATGCCAATG
ATGACGTCAAGAGCGCGACGGGAAGCGTCACTCCGCGCGGAGGAGTTGAA
CAGAATGTGGAAATCGACCCAGCCTTCCTGACTATCTCTTTGGCGCGCGC
GCCCAGGGTGAGGT
UFO01373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bap-RA | 1449 | CG7902-RA | 136..1281 | 50..1168 | 4935 | 96.9 | Plus |
| vnd-RB | 3412 | CG6172-RB | 2147..2205 | 686..744 | 205 | 89.8 | Plus |
| vnd-RA | 3033 | CG6172-RA | 2100..2158 | 686..744 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21389580..21390190 | 494..1085 | 2235 | 96.4 | Plus |
| 3R | 32079331 | 3R | 21389015..21389459 | 50..494 | 2225 | 100 | Plus |
| X | 23542271 | X | 596886..596944 | 686..744 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:56:27 has no hits.
UFO01373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:22 Download gff for
UFO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1218 | 50..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:39 Download gff for
UFO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 133..1215 | 50..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:34 Download gff for
UFO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1218 | 50..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:34 Download gff for
UFO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21389015..21389459 | 50..494 | 100 | -> | Plus |
| 3R | 21389581..21390218 | 495..1108 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:22 Download gff for
UFO01373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17214737..17215181 | 50..494 | 100 | -> | Plus |
| arm_3R | 17215303..17215940 | 495..1108 | 96 | | Plus |
