UFO01374.5prime Sequence
1193 bp (1041 high quality bases) assembled on 2008-08-22
> UFO01374.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGATATAATACAAAAGTCAATCTTCAACAGCGGCCCACACAGCAG
AGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCGTATAACACACCAC
CGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTTGGCGGATCACCAC
CAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGCAGATGCAGCACAT
CAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCCATCGCCGGATACG
GATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGCTCGTGGCCAGCAG
GACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACGACAGCAAGTCCTG
CAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTCGTATGCAACTGGA
CAGATTGCGATAGAGTTTTCGACACCTTGGATGCACTGGCACAGCACGTG
ACCCAGCGACATGCGATCGCCAGCCTGACAGACGGACTCTACTATTGCCG
CTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAATGCCCGCTACAAGA
TGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCCACATCGCTGTCAC
CTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGAAGATCCACATTAG
GTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTCGAGGGCTGCCAGA
AAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACACGCGCACCCATTC
GATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCCAGAAGCGCTACA
CGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTCAAGCACAGCATC
CACCTGATCGCAGCCAGCCGCTCACTCTGCCCAGCGTACCCTGTCTCTGA
GCAGCAGCGATCAGCGTCACGTGTCTCCGCTGCAGCAGTGTGGAGTCACA
GCTCCTCCTCATCGCCGCTACTACGATGACTCACATGAGCCAGCGATACT
CGCTTAACCAACGATGCGATTCTCGCCCAGCTATGCTAGGCATAGAACAG
CATAGCCTATCCCAGCAGACTCTCGTTAAATGGACCTGATCGCTGACTGG
CATCTCGAATCGAAGCTTCGAACCTTCTTTGAGCGCGGCCAGT
UFO01374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sug-RA | 1343 | CG3850-RA | 71..1152 | 52..1106 | 4700 | 97 | Plus |
| sug-RB | 1468 | CG3850-RB | 228..1277 | 84..1106 | 4540 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12929782..12930267 | 462..947 | 2335 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12928930..12929341 | 52..463 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:13 has no hits.
UFO01374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:36 Download gff for
UFO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..1091 | 46..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:40 Download gff for
UFO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 62..1088 | 46..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:22 Download gff for
UFO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..1091 | 46..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:22 Download gff for
UFO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12928924..12929341 | 46..463 | 99 | -> | Plus |
| 2R | 12929784..12930392 | 464..1054 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:36 Download gff for
UFO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8816429..8816846 | 46..463 | 99 | -> | Plus |
| arm_2R | 8817289..8817897 | 464..1054 | 96 | | Plus |
