UFO01375.5prime Sequence
1199 bp (1018 high quality bases) assembled on 2008-08-22
> UFO01375.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGAAGTCCAATACGTACGAACTGCACAACTACGCCGATCTGAATGA
CATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAAAGGAAGACGGCCA
GTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCGACAAAAGAGGGGC
TCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACTTTCAACTAGAATT
AGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAAAATGCACCCACCA
AGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCGTCGGAAAACAGCG
AATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACACGGCCTTTGAGAC
ACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAGGATGCGGCCAATA
CCAACGAGAAGCTGACCAAAATCACCACCCTGAGACTGGCCATGAAGTAC
ATCACCATGCTGACCGACTCGATTCGAGATCCCAGCTATGAAAGCGAATT
TATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAGGCGAGAGTGGACT
TGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGTTCCAGTTGCCAAG
AAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTTCCGCCGCGAGCAA
AAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAGATACCACCGATAA
GTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGGATCGCCTGCCTCC
TCCGCCTACGCATCGCTCTCCTCGTCATCGAACAGCCACAGCAGCAGTAG
CAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTGAACGGAATCAGCG
CCCTGACTCTCTGCTCTGGATACTCCGATGGGGATTCCCTCTCTGTCTAG
TCCCGCTATGGAGTCTACTCACTGCAGCGGGGATCCTGTGCCGTGCGAGT
GATCTGCCATGTCGGTCTGAAGTCGATGTGAGCTCAGTCTGCATACTGAC
AAGTCAGATCTCGACTTGCAGCGATCAGCAGCGTCGCTGATAGTCGTCCC
GCTGAGTCATCATTCCACTGTCCAGAATCCGGATGTTCCAGAAGCTTCGA
ACTCTTGATGCCGCCAGATGACTGACTGCTAACTATCAATCCACCATGG
UFO01375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 2411 | CG5441-RB | 960..1971 | 54..1042 | 4515 | 97.7 | Plus |
| tx-RA | 1652 | CG5441-RA | 201..1212 | 54..1042 | 4515 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26447540..26448432 | 54..943 | 4315 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:15 has no hits.
UFO01375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:20 Download gff for
UFO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 542..1491 | 54..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:42 Download gff for
UFO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-RA | 411..1360 | 54..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:25 Download gff for
UFO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 201..1150 | 54..992 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:25 Download gff for
UFO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26447536..26448489 | 49..992 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:20 Download gff for
UFO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22273258..22274211 | 49..992 | 98 | == | Plus |
