Clone UFO01377 Report

Search the DGRC for UFO01377

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:13
Well:77
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG10267-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01377.5prime Sequence

1227 bp (1063 high quality bases) assembled on 2008-08-22

> UFO01377.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGGTCTGCCTGGCGCA
GAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAGGAAGGCGAGGAAT
CGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTCATACAGCAATCTG
AACGACAGAGAACACATACCCGATGGCATCTGCAAGTCCTGCAAGGTCGA
ACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTGCGCAAGCAGATGG
AGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGACGAATCAGATGTG
ATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAATGCGACGAGGAGAT
GTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAGCACCAGGAAGAAA
AGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGATCAGCAGGAGTGC
ATTGGCGACACCATCGAGTACTTGGAGGACAACTACACCATCGAGATGAA
CTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAGCAGTACGAAGAGA
CACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAAGGCAAGCCTGAAG
GCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCCTAACAACATCGGA
CGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGCGGAAACTTTTACG
AAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCATGACGGCATCTGC
CAATATGCATGCGAACTATGCGATGCCAAGTTCCAGGTGCGCGAGCAACT
GAGGAAGCACATGTACTCCCACACGGGCAGCAAACCCTATAAGTGCAGCT
TCTGCAGTCGTCAATTCTTCTACGAAGTGTTCTCAAGTCTCATGAAAATG
TCACCGTGCATCAAGCCCTACGTGTGCAAGTGTGCGACAAAGCGTTGCCT
ACGCTCACTCCCTGACAGCACGAGCTCATCACTCGACTCAACTGTACGCT
GCGATTATTGCAACAGACTCGTCTGCTGCATCCCATGGCGCCAGCACGAA
GAAACAACTGCACCAGAACGCGTATTGCTGCCGAAGACATGAACGTGAAA
TGGTGCGACAGGGGCGACGAATCGATTCAGCTCACGCAGCTTCGACATTC
TTTGGCGCGCGCGGGCCAGAAGGCTAA

UFO01377.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Zif-RC 1455 CG10267-RC 140..1261 54..1155 4985 97.4 Plus
Zif-RB 1394 CG10267-RB 79..1200 54..1155 4985 97.4 Plus
Zif-RA 1463 CG10267-RA 148..1269 54..1155 4985 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6457493..6458109 198..814 3085 100 Plus
3R 32079331 3R 6457287..6457430 54..197 720 100 Plus
3R 32079331 3R 6458167..6458301 815..948 625 99.3 Plus
3R 32079331 3R 6458414..6458490 958..1030 220 94.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:42:26 has no hits.

UFO01377.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:28 Download gff for UFO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 144..1256 46..1143 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:43 Download gff for UFO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10267-RA 130..1242 46..1143 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:57 Download gff for UFO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
Zif-RA 144..1256 46..1143 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:57 Download gff for UFO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6457283..6457430 46..197 97 -> Plus
3R 6457493..6458109 198..814 100 -> Plus
3R 6458167..6458301 815..948 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:28 Download gff for UFO01377.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2283005..2283152 46..197 97 -> Plus
arm_3R 2283215..2283831 198..814 100 -> Plus
arm_3R 2283889..2284023 815..948 99 -> Plus