UFO01377.5prime Sequence
1227 bp (1063 high quality bases) assembled on 2008-08-22
> UFO01377.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGGTCTGCCTGGCGCA
GAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAGGAAGGCGAGGAAT
CGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTCATACAGCAATCTG
AACGACAGAGAACACATACCCGATGGCATCTGCAAGTCCTGCAAGGTCGA
ACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTGCGCAAGCAGATGG
AGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGACGAATCAGATGTG
ATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAATGCGACGAGGAGAT
GTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAGCACCAGGAAGAAA
AGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGATCAGCAGGAGTGC
ATTGGCGACACCATCGAGTACTTGGAGGACAACTACACCATCGAGATGAA
CTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAGCAGTACGAAGAGA
CACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAAGGCAAGCCTGAAG
GCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCCTAACAACATCGGA
CGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGCGGAAACTTTTACG
AAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCATGACGGCATCTGC
CAATATGCATGCGAACTATGCGATGCCAAGTTCCAGGTGCGCGAGCAACT
GAGGAAGCACATGTACTCCCACACGGGCAGCAAACCCTATAAGTGCAGCT
TCTGCAGTCGTCAATTCTTCTACGAAGTGTTCTCAAGTCTCATGAAAATG
TCACCGTGCATCAAGCCCTACGTGTGCAAGTGTGCGACAAAGCGTTGCCT
ACGCTCACTCCCTGACAGCACGAGCTCATCACTCGACTCAACTGTACGCT
GCGATTATTGCAACAGACTCGTCTGCTGCATCCCATGGCGCCAGCACGAA
GAAACAACTGCACCAGAACGCGTATTGCTGCCGAAGACATGAACGTGAAA
TGGTGCGACAGGGGCGACGAATCGATTCAGCTCACGCAGCTTCGACATTC
TTTGGCGCGCGCGGGCCAGAAGGCTAA
UFO01377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 140..1261 | 54..1155 | 4985 | 97.4 | Plus |
Zif-RB | 1394 | CG10267-RB | 79..1200 | 54..1155 | 4985 | 97.4 | Plus |
Zif-RA | 1463 | CG10267-RA | 148..1269 | 54..1155 | 4985 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457493..6458109 | 198..814 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 6457287..6457430 | 54..197 | 720 | 100 | Plus |
3R | 32079331 | 3R | 6458167..6458301 | 815..948 | 625 | 99.3 | Plus |
3R | 32079331 | 3R | 6458414..6458490 | 958..1030 | 220 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:26 has no hits.
UFO01377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:28 Download gff for
UFO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..1256 | 46..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:43 Download gff for
UFO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 130..1242 | 46..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:57 Download gff for
UFO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..1256 | 46..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:57 Download gff for
UFO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457283..6457430 | 46..197 | 97 | -> | Plus |
3R | 6457493..6458109 | 198..814 | 100 | -> | Plus |
3R | 6458167..6458301 | 815..948 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:28 Download gff for
UFO01377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283005..2283152 | 46..197 | 97 | -> | Plus |
arm_3R | 2283215..2283831 | 198..814 | 100 | -> | Plus |
arm_3R | 2283889..2284023 | 815..948 | 99 | -> | Plus |