Clone UFO01379 Report

Search the DGRC for UFO01379

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:13
Well:79
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3919-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01379.5prime Sequence

927 bp (927 high quality bases) assembled on 2008-08-22

> UFO01379.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGTGCTTTAAAATCAAGAACAATTGCTATTTGAAATTGCAACATTC
ATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAATCGCAGTGTTCAA
AGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGTCCACGCCAACAAC
TGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCGAACTTAATAAGCC
AAAACTCGTGATAAAAGCACTGACATCGATTAATTGGAGCATTTTTAAAC
CTAATTCACTTTTTATATATGAAATGAATACACGCCGTCGGTCCATAGCT
CCACCACCGAACGTTTACGCCATCAATGCCAAAATATGTCATTTGGTGAA
ACTACATCCTTGTCTTTACGATCGTCACGATGACAACTACTTGCGGAAAT
CGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGAGATGCGAAATTCG
GTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCTCCAGCTATGCCCG
CTCAATAAAGTTGCATCACGGTGCGAATACGTACTATCTTAACAGCGAGC
TGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCCCGTTCCGCTCAGA
GGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACGACGAAGGGGATCC
CGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCACTCCCCGAGCTTTC
TGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGACCCTGCATCGGCG
ACGGACGTTGAGGCAACACAATTTAATAATGAACCATCATCAATCATGGA
TTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAGAGCGACAGCAGTG
AGAAGGAGGCAAGACATCAACCCGCTG

UFO01379.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 1358 CG3919-RB 20..895 53..927 4355 99.9 Plus
CG3919-RC 1406 CG3919-RC 20..877 53..910 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14411495..14411811 497..813 1570 99.7 Plus
3L 28110227 3L 14410645..14410901 53..309 1285 100 Plus
3L 28110227 3L 14411081..14411272 310..501 960 100 Plus
3L 28110227 3L 14412033..14412132 811..910 500 100 Plus
Blast to na_te.dros performed 2014-11-28 23:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6822..6909 54..136 131 66.3 Plus

UFO01379.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:18 Download gff for UFO01379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..895 47..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:45 Download gff for UFO01379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..895 47..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:37 Download gff for UFO01379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..895 47..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:37 Download gff for UFO01379.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14410639..14410901 47..309 98 -> Plus
3L 14411081..14411272 310..501 100 -> Plus
3L 14411500..14411810 502..812 100 -> Plus
3L 14412035..14412136 813..913 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:18 Download gff for UFO01379.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14405135..14405236 813..913 99 -> Plus
arm_3L 14404181..14404372 310..501 100 -> Plus
arm_3L 14404600..14404910 502..812 100 -> Plus
arm_3L 14403739..14404001 47..309 98 -> Plus