UFO01379.5prime Sequence
927 bp (927 high quality bases) assembled on 2008-08-22
> UFO01379.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGTGCTTTAAAATCAAGAACAATTGCTATTTGAAATTGCAACATTC
ATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAATCGCAGTGTTCAA
AGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGTCCACGCCAACAAC
TGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCGAACTTAATAAGCC
AAAACTCGTGATAAAAGCACTGACATCGATTAATTGGAGCATTTTTAAAC
CTAATTCACTTTTTATATATGAAATGAATACACGCCGTCGGTCCATAGCT
CCACCACCGAACGTTTACGCCATCAATGCCAAAATATGTCATTTGGTGAA
ACTACATCCTTGTCTTTACGATCGTCACGATGACAACTACTTGCGGAAAT
CGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGAGATGCGAAATTCG
GTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCTCCAGCTATGCCCG
CTCAATAAAGTTGCATCACGGTGCGAATACGTACTATCTTAACAGCGAGC
TGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCCCGTTCCGCTCAGA
GGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACGACGAAGGGGATCC
CGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCACTCCCCGAGCTTTC
TGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGACCCTGCATCGGCG
ACGGACGTTGAGGCAACACAATTTAATAATGAACCATCATCAATCATGGA
TTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAGAGCGACAGCAGTG
AGAAGGAGGCAAGACATCAACCCGCTG
UFO01379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..895 | 53..927 | 4355 | 99.9 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..877 | 53..910 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14411495..14411811 | 497..813 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 53..309 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 310..501 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412132 | 811..910 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 54..136 | 131 | 66.3 | Plus |
UFO01379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:18 Download gff for
UFO01379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..895 | 47..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:45 Download gff for
UFO01379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..895 | 47..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:37 Download gff for
UFO01379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..895 | 47..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:37 Download gff for
UFO01379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14410639..14410901 | 47..309 | 98 | -> | Plus |
3L | 14411081..14411272 | 310..501 | 100 | -> | Plus |
3L | 14411500..14411810 | 502..812 | 100 | -> | Plus |
3L | 14412035..14412136 | 813..913 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:18 Download gff for
UFO01379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14405135..14405236 | 813..913 | 99 | -> | Plus |
arm_3L | 14404181..14404372 | 310..501 | 100 | -> | Plus |
arm_3L | 14404600..14404910 | 502..812 | 100 | -> | Plus |
arm_3L | 14403739..14404001 | 47..309 | 98 | -> | Plus |