UFO01380.5prime Sequence
1233 bp (1039 high quality bases) assembled on 2008-08-22
> UFO01380.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCATGCGCGGCGGCATAC
GTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCACCCCTTCGATCTGACC
CTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGCCGGCGCCGTTGACGA
TTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACCAGGACCTGAGTCCCA
CTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTGACCAAGGTGCAGGCT
GTTCTCGACAATCTGGTGGTTGCACCCGGGGATCTGACAACTTGTCAACT
GGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGGGCACCATACTGACGG
GCAACAATGTAGCCGATGTGGTGGTTATCCTCAAAACCCTGCCCACCAAG
GAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGCCGACCTGAAGGCCAG
CATGAAGACTGAAGTTCTGACCAAGGGCGATCAGCACACCGTACAGATCC
ATGAGCGGGGCTTCGACATCGCCAACGTGCATGCCAAGGTGCGCATTCTG
ATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGAGCCTGAGATCCATTT
GGATCACAAACTGATGCAGAGCCATCTGGCTGCCATTCGGCACACGCGCT
GGTTTGAGGAAAATGCCCACCACTCCTCGATAAAGGTGCTCATTCGCATT
CTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTCGCCGCTGTCGGCCTG
TATGCTGGACCTGATCGCCCATTTGGCCATCATGAACAACCCGTCGCGAC
AGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTCTTTCAGCTACTCTCC
GCCGGGCTCTTCCTGCCGGGCTCGGCCGGCATCACGGATCCCACCGAGCC
GGGACACATCCGTGTGCACACTGCCATGACATTGGAGCAGCAGGATGTGT
GCTGCTACACATCGCAGACCCTACTGCGCGTGCTGGCCCACGGCGATACA
ACACATTTGGGACTGGAGGCAACACAGCGTTGTGCGCGAATGTCGTCTGG
ACGGCGTGTGCATTCCCGCTGACCGCTGTCTCAGAAGCCACGGACAAAGA
GCCAACTCAGAGAATCCACTGATCGAATGAACCAAAAGGCCGACATGGCC
AGCACTTCTGAACATTCTTGCGCCGCGCCCGAA
UFO01380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 82..1190 | 52..1147 | 5200 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12427989..12428784 | 1131..346 | 3485 | 98.5 | Minus |
| 3R | 32079331 | 3R | 12429036..12429201 | 217..52 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12428846..12428975 | 345..216 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:30 has no hits.
UFO01380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:22 Download gff for
UFO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..1192 | 44..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:46 Download gff for
UFO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 73..1190 | 44..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:19 Download gff for
UFO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..1192 | 44..1150 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:19 Download gff for
UFO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12427989..12428784 | 346..1131 | 98 | <- | Minus |
| 3R | 12428846..12428974 | 217..345 | 100 | <- | Minus |
| 3R | 12429037..12429208 | 44..216 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:22 Download gff for
UFO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8254568..8254696 | 217..345 | 100 | <- | Minus |
| arm_3R | 8253711..8254506 | 346..1131 | 98 | <- | Minus |
| arm_3R | 8254759..8254930 | 44..216 | 97 | | Minus |
