UFO01384.5prime Sequence
1209 bp (74 high quality bases) assembled on 2008-08-22
> UFO01384.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAATCCA
CATGCCGCCTGGAACGCAAATTGCCAGCGACCGCGATATGGAAACCGCTC
TGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCATCACCATCGGCTCGGCC
AAATACGCGTGCACCGTGCCCAATTGCGAGGCCACATTCAAGCGGCTGGA
CCAATTGGATCGCCTTGAGTATCATCACGCAGGGATTAATAAGCACGCCT
GCTCGTACGAGGGTTGCGACAAGACATACTCAATTGTGACGCACTTATTG
AGGCATCTGCGCACCACCCACGACCGTCCGGAGTCGGCGGCCAACAATAC
GGTGAAGTGCGCGCTGGAGGAGTGCACCAAGATGTTCATCTCGGTTAGCA
ACATGACCCGCCACATGCGCGAAACCCACGAGAGCCCAAAGGTCTATCCG
TGCAGCCAGTGCACTGCCTAATTCTCGCATAAGCTCAAGCTGAAGCGCCA
CGAGATCAGGGAGCACACGCTGGAGTATCCGTACAGCTGCTCAAAGTGCT
CGCGCGGCTTCTACCGCCAGTGGCAGTGCCTGAGTCACGAGCCCAACTGC
AAGCTGTACAAGTGTCCCGGCTGCCCGCTGCAGTTCGACAAATGGACGTT
GTATACTAAGCATTGTCGCGACTCGTTGCACGGCGAGAATCGCCATAAGT
GCGACCGCTGCTATAGTGCCTTCTACAACCCGAGCGAACTGAATCGTCTC
CTCTAGGTGAAACACATGGAGGCGGCGCAGACGGATGAGTGCGCCACCTC
CTTCACCTGCAACGAGGAGGGATGCGGCAAGAGTTACTCGTACCTCAAGA
ATCTACGCCAGCACATGCTCACAGCCCAATCGGGCAGCGATTCGAGTGCC
AGTCCTTGGCACTGCTGCCGCTGTTTCAGCAGTGCGCAAATCTGGCGAGA
CATCTGCTCATGGCATCACAAGATGTGCTACGACTACGTATTGAAGCGAT
AGTACGACAGAGTATGACTGGAAAGGGGGCTGACTCAGTCCCATCCCGGA
GCGACGAAGCATGCATGACCAACAACATTCAGGACTATCCTACTGGCTGC
TTCACTGGACAGGTAAATGATGAGGCGTGCCAAGACGACTTGATCCCGAG
ATCCCAGTCCTGGATGCGTCCCGTTAGAGTTCGTGCACATATCGTTTGTT
GAAGCTAAA
UFO01384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1834 | CG9609-RA | 259..1353 | 52..1127 | 3840 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16785781..16786501 | 960..241 | 2950 | 94.9 | Minus |
| X | 23542271 | X | 16786565..16786750 | 237..52 | 780 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:15 has no hits.
UFO01384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:18 Download gff for
UFO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 253..1192 | 43..983 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:38 Download gff for
UFO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 223..1162 | 43..983 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:26 Download gff for
UFO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 253..1192 | 43..983 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:26 Download gff for
UFO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16785757..16786504 | 238..983 | 94 | <- | Minus |
| X | 16786565..16786756 | 43..237 | 92 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:18 Download gff for
UFO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16679790..16680537 | 238..983 | 94 | <- | Minus |
| arm_X | 16680598..16680789 | 43..237 | 92 | == | Minus |
