UFO01385.5prime Sequence
1138 bp (392 high quality bases) assembled on 2008-08-22
> UFO01385.5prime
CTATAGCATACATTATACTAAGTTATCAGTCGACATGATGTGGTGCAAAA
CGGTGATAGTGTTGCTGGCGACAGTCGGCTTTATTAGTGCCGAGGTTTAT
CTGAAGGACAATTTCGACAACGAAAACTGGGAGGATACGTGGATCTACAC
CAAACATCCTGGCAAGGAGTTCGGAAAATTCGTCCTCACCCCCGGTACCT
TCTACAACGATGCTGAGGCCGACAAAGGCATTCAGACCTCTCAGGATGCT
CGATTCTACGCGGCCAGCCGCAAGTTTGATGGCTTCTCCAACGAGGACAA
GCCCCTCGTGGTGCAGTTCTCCGTGAAGCACGAGCAGAATATCGACTGCA
GCGGCGGCTATGTGAAGCTGTTCGACTGCTCCCTCGACCAGACCGACATG
AACGGCGAGTCGCCGTACAAGATCATGTTCGGCCCGGACATCTGCGGACC
CGGCACCAAGAAGGTCCATGTGATCTTCATCTACAAGGGCAAGAACCACC
TAATCAGCAAAGACTTCCGCTGCAAAGATGACGTGTACACCCACTTCTAC
AGCTGATTGTCAGACCCGACAACACGTACGATGTGCTCATCGACAACGAT
AAGGTGTGAGTCTGGCCACCTGAAGGACGACTGGTAATTTCCTGGCCCCC
CAAGAAATCAAAGGATCCCACAGCCCACCAAGCCCGAAGACTGGGGAACA
AAGGGCCACCTTTCCCGATCCCGATGACAAAAAGCCGAAGACTGGCACAA
ACCACAGCACATTCCCCGACCAAATGCCACAAACCCTGACGATTCGAAAC
GATGAAAATGGACGGATAGTGGAACCACCGAGAATCGACACCCCTGAGTT
CGAGGGCGAGTGGCTTCAAACAGCTGGACAACCTCCACTACCAGGGCGCC
TGGGAGCTTCCGAAGATCTCGATCCCTGAGTATGTGCCCGAACTACAGTT
TGTTTCCGCCCAGGGAAGTTGGCACCTTGGGGTATTCGATCTTGGCAAGG
TCAGTTCCGTCTTTATTTTCAACATGTTCTGAATCCGGATGACTTGCAGC
TGGCTCGTTAGGTTGTTTTCCGACATAAGAAAAACTCCTAGCTTTGTTTT
AAATAAAAATTATTATTGTGTCTCTTTCGATTGAGTGG
UFO01385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1677 | CG9429-RB | 85..991 | 33..941 | 3445 | 93 | Plus |
| Crc-RA | 1430 | CG9429-RA | 85..991 | 33..941 | 3445 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9629716..9630182 | 695..226 | 1865 | 95.5 | Minus |
| 3R | 32079331 | 3R | 9630448..9630554 | 228..122 | 520 | 99.1 | Minus |
| 3R | 32079331 | 3R | 9629377..9629616 | 941..704 | 420 | 83.1 | Minus |
| 3R | 32079331 | 3R | 9630678..9630767 | 122..33 | 420 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:34 has no hits.
UFO01385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:41 Download gff for
UFO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 78..1002 | 25..953 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:48 Download gff for
UFO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 112..1036 | 25..953 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:36 Download gff for
UFO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 78..1002 | 25..953 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:36 Download gff for
UFO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9629708..9630180 | 228..704 | 95 | <- | Minus |
| 3R | 9630449..9630553 | 123..227 | 99 | <- | Minus |
| 3R | 9630678..9630774 | 25..122 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:41 Download gff for
UFO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5455430..5455902 | 228..704 | 95 | <- | Minus |
| arm_3R | 5456171..5456275 | 123..227 | 99 | <- | Minus |
| arm_3R | 5456400..5456496 | 25..122 | 94 | | Minus |
