UFO01387.5prime Sequence
1246 bp (1061 high quality bases) assembled on 2008-08-22
> UFO01387.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGACCACAATCGCGGATTTATTCACAAAGTATAATTGCACAAATTG
CCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCGGAGTGCGAAAACT
TCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGAGATCGGCGCCCAT
CAAAACAACCACTCCTACCAGTTCATGGACACCGGCACTTCCATATTGAG
TGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAGGAAATCCGCCTGT
TGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGAGGACATTAGCAAG
CACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGGAGTACGTGAATAA
GTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACGCCGGCCCAGAGCC
AGAGACCCCGCCTTATCGATCACACTGGAGACGACGACGCTGGTCCTCTG
GGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAATCAACTCCGATGA
GGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGCTTTGAGCGGGAGT
ACGATCCCACGGCAGAGCAACTGATCTCGAACATCTCATTAAGCTCCGAG
GATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACGTTGACATATACAC
CCGCCGACTCAGAGAGCGTGCTCGCAGGAAACGGATGGTCAGGGACTATC
AATTAGTATCAAATTTCTTCCGAAACAGAAATTACGCTCAGCAACAAGGA
CTCACCAAGGAGCAGCGCGAGTTTCGGGACAGATTTCGGGTCTACGCCCA
GTTCTACACGTGTAACGAGTATGAGCGGCTATTGGGATCACTGGAGCGCG
AAAAGGAACTGCGCATTCGACAGTCAGAGCTGTACCGATACCGGTATAAT
GGCCTGACCAAAATCGCGGATGCACACATTTCGAGCAGCACGCGCACAGC
GACGCACGCTCTACAGGACATATGGCATGGCAGACCCTCCACTGCATAAT
AACGCCGCCAAACACGAGCGTCGATGTTCTATAAGACATGTTAACCAAGG
ACCCCACGCAACCTCCAATGGAGTCATCGCCGCAAGCTTCTTGCACTCCC
CCAAACCGAATCCAGAAGGTCAAGTTCACGCGCGGAGGCTAGTTCATTTA
CTCGCACAAGAAAACGGTTCTCAATTGCGGAAACAGAACGTTGTTT
UFO01387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..1228 | 54..1167 | 5050 | 97.6 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..1228 | 54..1167 | 5050 | 97.6 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..1077 | 54..1032 | 4775 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238780..8239610 | 993..164 | 4090 | 99.8 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 167..54 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:51 has no hits.
UFO01387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:19 Download gff for
UFO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1233 | 54..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:49 Download gff for
UFO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1230 | 54..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:38 Download gff for
UFO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1233 | 54..1171 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:38 Download gff for
UFO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8238731..8239606 | 168..1036 | 99 | <- | Minus |
| 3R | 8240310..8240423 | 54..167 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:19 Download gff for
UFO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4064453..4065328 | 168..1036 | 99 | <- | Minus |
| arm_3R | 4066032..4066145 | 54..167 | 100 | <- | Minus |
