UFO01389.5prime Sequence
1236 bp (1045 high quality bases) assembled on 2008-08-22
> UFO01389.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGACCACGCTGTGCCGCACCTGTGGCCAGGAGGCGGAGCACGCCAAG
TCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGCAACATCCTCAAGCT
GACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCCAACGAGGATCTGCT
TATCCTGCTTGCTGGATCTGAACGATGCCATCGCATTCCGGGAGCGCTGC
ATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGCAAACAAGAGGATTC
GGACACTGAGACTGCAAGGGAAGGCGGGAATAACAGGTTAGAAAGTAGGG
TGGATGTTATGCCCATTAGTATTGCACAGCCGCAAAGGAGAAGGATTCTA
CCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTTAAGACAGTAGAAAC
CCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCCTGCCGATCTCGTCG
ATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGAGCGAGCCTCAGCTT
TCATCTGATTATCCAGTGGAGTCCATGAATCACGAAGAGCCAGCATCCGA
AATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACTACAAGTCATCGGGG
AAGTACAGAAAAACCGAAGAAAACCGAGGAGCAGAGGGTGCTTAGAGGAG
TGTCCTGGCAAGGACATGGCTAAAATAGAGAATATTGACTCAACTACCAA
TAAGACCAAAGAGGAAAAGTATGCCACACGAAACAAATGGGGAGCTGCCA
AAAGAGCCTATGCACTGGAGCACCGACTATATTTCTGCGACCAATGCGGC
AAAACTTTTAGCGAGAAGGCAACTTCAATGTGCACCTCAGACGGCACAAG
GCACCAAGGAGTTCCAGTGCCAGGAGTGCGACCGCATGAGTTCACCCACA
CCTGCTCAATTTGCCACGTGCGGATTAGCATCGCGGGAGCTGCCCTACGT
GTGCAGTACTGCGCAGCGATTGACACTGCCTCAGCGCTGACCACGAGCGC
ACCACAGGAAGGTCCGTCCACCGACCACACGTGTGCCCCCCATGCAGAGC
CTCAGACCTCCCACGGCCCTCAAGAACCACTCTGTCCACCAGGGACACGC
CATCCATGTGCGGACCTGCCACGTCTTCTATTAGAGAGAGCCTGCACACC
ACCTACAGTTCGGAGACACACTCCCCTGGTAAATTG
UFO01389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..1153 | 53..1095 | 4775 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17802159..17803006 | 1005..163 | 3880 | 99.1 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 163..53 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:10 has no hits.
UFO01389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:47 Download gff for
UFO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..1163 | 46..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:51 Download gff for
UFO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..1132 | 46..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:11 Download gff for
UFO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..1163 | 46..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:11 Download gff for
UFO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17802048..17803005 | 164..1102 | 97 | <- | Minus |
| 3R | 17803056..17803169 | 46..163 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:47 Download gff for
UFO01389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627770..13628727 | 164..1102 | 97 | <- | Minus |
| arm_3R | 13628778..13628891 | 46..163 | 96 | | Minus |
