UFO01390.5prime Sequence
1234 bp (1026 high quality bases) assembled on 2008-08-22
> UFO01390.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGATCTCGCCGGAACAAGAGGAGGTCAACATGGTCCTGGATCGCCATG
TACGGCAGAACATAAAGGACCTGATGCACGAGGCTCATGTCCATGCGAGC
CTGCTGAACAACGAGGGACGTGACCGTTTCCACTCGGACTCCAGTTTGGA
CCAGGATTCCCTTCACGCCGTCGTTGGGAATGATCTGAGCACCGAACAAG
GCGCCAACCAGGTGCAAAACTACCACGACATGATGGTGGACAGTGAACAC
CACGTCGACATTAATGGGTCGCTGCGCAAACGTCGCGGAAATCTGCCCAA
GTCATCTGTAAAGATTTTAAAGCGTTGGCTTTATGAGCACCGCTATAACG
CCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCAGGAGGCCAATCTG
ACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCCGTCGCCGCATTCT
ACCCGAGATGATCAGGCGCGAGGGCAACGATCCTCTGCACTTCACCATAT
CGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAGATCAAGTGCGTTG
GGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAAGTCCTGCTTCCGA
AGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCCGGTGAGATTCACG
AGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTATGTGCAGGGCCCC
AACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGGACAGTGTCATCTA
CAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAGTCCTGTGGGCCGA
ACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCATGATTGGCAGAGCGTT
ATAAAAACTGTATTTGGGACTGAGAAGTCAGCACTTCGGCTGGCAATAAT
CCAGGTACTCTGGTCTAGCATCTGTTCAGAATACCGCCATCTGGATCGCA
TCAGACTGCGAGCGTGACGTGATCACAGTGACGACTTTGAAAGCGAGCTG
AATAATAATACAGGCCTCGAATCGACAATCGATCTACCACCTCAATCACA
GACTTGTTACATCTACAGGGGGACGAAGTGGATAACGGGGCGAGCCAGCC
TGGCTAGTCATTATTCGTCTATCCAGTCACAGTCCAGATGAGAGGGCAGT
CAGTCTAAACAATGGAACTGCCCATGGCGTGTGT
UFO01390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vis-RA | 1741 | CG8821-RA | 94..1194 | 52..1130 | 4870 | 97.5 | Plus |
| achi-RA | 2122 | CG8819-RA | 305..1411 | 52..1130 | 4360 | 94.4 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 52..803 | 3295 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12509777..12510267 | 656..166 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 12513566..12514062 | 656..166 | 2090 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 805..654 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 805..654 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12510324..12510439 | 167..52 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12508893..12508997 | 905..801 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12512682..12512786 | 905..801 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12514132..12514244 | 164..52 | 445 | 92.9 | Minus |
| 2R | 25286936 | 2R | 12508739..12508833 | 995..906 | 260 | 94.7 | Minus |
| 2R | 25286936 | 2R | 12512528..12512622 | 995..906 | 230 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:33 has no hits.
UFO01390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:24 Download gff for
UFO01390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 177..1230 | 52..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:53 Download gff for
UFO01390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 368..1421 | 52..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:21 Download gff for
UFO01390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 94..1147 | 52..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:21 Download gff for
UFO01390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12508712..12508833 | 906..1019 | 93 | <- | Minus |
| 2R | 12508893..12508994 | 804..905 | 100 | <- | Minus |
| 2R | 12509571..12509719 | 655..803 | 100 | <- | Minus |
| 2R | 12509779..12510266 | 167..654 | 100 | <- | Minus |
| 2R | 12510325..12510439 | 52..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:24 Download gff for
UFO01390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8396217..8396338 | 906..1019 | 93 | <- | Minus |
| arm_2R | 8396398..8396499 | 804..905 | 100 | <- | Minus |
| arm_2R | 8397076..8397224 | 655..803 | 100 | <- | Minus |
| arm_2R | 8397284..8397771 | 167..654 | 100 | <- | Minus |
| arm_2R | 8397830..8397944 | 52..166 | 100 | | Minus |
