UFO01392.5prime Sequence
1141 bp (936 high quality bases) assembled on 2008-08-22
> UFO01392.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGATCTCGCCGGAACAAGAAGAGGTCAACATGGTCCTGGATCGCCA
TGTACGGCAGAATATCCAGGACATGATGCACGAGGCTCATGTCCAGGCGA
GCCTGCTGGAGAACGAAGGACGCGGCCGTTTCCACTCGGACTCAAGTTTG
GACCAGGATTCTCTTCACGCTGACGTCATCGTGGAGGAGGATCAGAGCAC
CGAACACGGCGCCAACCAGGTGCAAAACTACCACGACATGATGGTGGACA
GTGAACACCACATCGACATAAATGGGTCGCTGCGCAAACGTCGTGGAAAT
CTTCCCAAGACCTCTGTAAAGATTTTAAAGCGTTGGCTTTATGAGCACCG
CTATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCAGGAGG
CCAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCCGTCGC
CGCATTCTACCGGAGATGATCAGGCGCGAGGGCAACGATCCTCTGCACTT
CACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAGATCAA
GTGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAAGTCCT
GCTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCCGGTGA
GATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTATGTGC
AGGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGGACAGT
GTCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAGTCTGT
GGGCCGAACAGCGGAGAGGAGTACGCTTCGAGACCTCCCATGATGGCAGA
GCGTTATAAAAACTGTATTTGGTACTGAGAGTCAGCACTCGCTGCATATC
AGTACTCTGTCTACGATCTGTCAGATACGCATCTGATCGCATCGACTGCA
GCGTGACTGATCACAGTTGACTGACTGGAGCGCCTGATAGAATTACAGCC
TCGATCCGACATTCGATCTACATCCATCACTGACGTGGTGAATTCAGCGT
AAGGTTACGTCAGCGACTGCAGTCAATATCGCATGTGCCCA
UFO01392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| achi-RA | 2122 | CG8819-RA | 305..1195 | 54..939 | 4310 | 99.2 | Plus |
| vis-RA | 1741 | CG8821-RA | 94..978 | 54..939 | 3800 | 95.6 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 54..811 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12513566..12514063 | 664..167 | 2490 | 100 | Minus |
| 2R | 25286936 | 2R | 12509777..12510268 | 664..167 | 2095 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 813..662 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 813..662 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12514129..12514244 | 169..54 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12510327..12510439 | 166..54 | 445 | 92.9 | Minus |
| 2R | 25286936 | 2R | 12508893..12508997 | 910..809 | 345 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12512682..12512786 | 910..809 | 345 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:13 has no hits.
UFO01392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:19 Download gff for
UFO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 305..1202 | 54..944 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:54 Download gff for
UFO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 294..1191 | 54..944 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:28 Download gff for
UFO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 305..1202 | 54..944 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:28 Download gff for
UFO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12514130..12514244 | 54..168 | 100 | | Minus |
| 2R | 12512682..12512783 | 812..910 | 95 | <- | Minus |
| 2R | 12513360..12513508 | 663..811 | 100 | <- | Minus |
| 2R | 12513568..12514061 | 169..662 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:19 Download gff for
UFO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8400865..8401013 | 663..811 | 100 | <- | Minus |
| arm_2R | 8400187..8400288 | 812..910 | 95 | <- | Minus |
| arm_2R | 8401073..8401566 | 169..662 | 100 | <- | Minus |
| arm_2R | 8401635..8401749 | 54..168 | 100 | | Minus |
