UFO01393.5prime Sequence
1188 bp (1033 high quality bases) assembled on 2008-08-22
> UFO01393.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGTTTCGCACTACTACAACACACTGCCCTACACACAAAAGCACAGT
GCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAGCCATGGAACTGGAC
GCCCAACTACCACCACACGCCGCCGAACCACCAGTTCCTGGGCGATGTGG
ACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCCACCAGATGTACTAC
AACTCCCATCACATGTTCCACTCGGCGGCGGCGGCCTCTGCCGGGGAGTG
GCACTCACCCGCCTCGAGCACGGCGGATAACTTCGTTCAGAATGTGCCCA
CGTCGGCCCACCAGCTGATGCAGCAGCACCACCATCATCACGCCCATGCC
TCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGCGGTGGTGCACCGGG
TGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGGCGTCGGAGGAGCAG
GCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAGGACCAGGTTCCGCA
CCACCCAACCATCAGCAGCACATCGCCGAAGGTCTGCCGTCGCCACCGAT
TACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGCGCCGACTTCTGCCT
CGTCGCCGCATCATCACTTGGCACACCATTTGAGTGCCGTCGCCAACAAC
AACAACAACAACAACAACAACAACAATAGCCCATCCACCCATAACAACAA
CAACAATAACAATTCGGTGAGCAACAACAACAGGACATCGCCATCGAAGC
CGCCATACTTCGACTGGATGAAGAAGCCCGCCTATCCAGCACAACCACAA
CCAGGCAAAACCCGCACCAAGGATAAGTACCGCGTGTGTACACCGACTTC
CAGCGCCTGAGCTGGAGAAGGAGTACTGCACCTCCCGCTACATCACCATC
CGGCGAGAGCGAGCTCGCCCAGACGCTGTCGCTGTCGAGCGCAGTTAGAT
CTGTTCAGACCGCCGCGCCAGGACGCAGCAGACAGAGTAGCGATCGACGT
GATGGGCGTGGGAGTGCACATGCGACTACAGCAGCTGCTGACGTAGCGAC
CTGGATCGCTGCACTGTCCCTTCCTGCACTCATGACCATGGCGGGCAAGA
ACTCGCATGCCTGATCCACTGACAAGACATCTTTGGCG
UFO01393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cad-RB | 2353 | CG1759-RB | 215..1276 | 53..1090 | 4740 | 97.7 | Plus |
| cad-RA | 2516 | CG1759-RA | 378..1439 | 53..1090 | 4740 | 97.7 | Plus |
| cad-RC | 2570 | CG1759-RC | 378..1179 | 53..854 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20771108..20771910 | 53..855 | 4015 | 100 | Plus |
| 2L | 23513712 | 2L | 20781796..20781935 | 852..987 | 535 | 97.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5071..5139 | 34..100 | 124 | 66.7 | Plus |
UFO01393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:04 Download gff for
UFO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 373..1443 | 48..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:55 Download gff for
UFO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RB | 210..1280 | 48..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:21 Download gff for
UFO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 373..1443 | 48..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:21 Download gff for
UFO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20771103..20771909 | 48..854 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:04 Download gff for
UFO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20771103..20771909 | 48..854 | 99 | -> | Plus |
