UFO01394.5prime Sequence
1160 bp (988 high quality bases) assembled on 2008-08-22
> UFO01394.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCCTCCGCCGTTAACATCCAGATCGTCTCTATGCCGAATCTGGCCA
AGATCGAGAGCTTCCTGAAGGATGTCAGCTACCGGGAGACGATCGAGTAC
AGTGCCAACTTCAACACGCGCTTGTGCAGCGAACGGCGCCACCGGCTGCC
CTTCCTCGATCCGCAGACAGGCGTCGCCCAGAACCACTCGCAGCTCTTCC
TGGACAAGCGACAGCGGATGCCCGGCTTCCGGCAGGGCCAGATCTACACG
TATCCGGCGGCCCGCTGGCGGAAGAGCCGTCGTCAGTACTTGAGCAAGAT
GTACAGCCGCTTTCCCGAGCGTCCCTTCCAGGCGCTACGCAAGGAGCACG
AAGCTCTGGTGGCCAGCGGCGTCAATCTGGGACTGAGCAGCCTGACCAGC
GGTGTGGGCTCCATGCCCGGCAGCAATAGCCTGGCCAGCAGCTCCTCCCT
AACGCTCAATATGCTTACGGGCGGCGGAGCCGCGCCGGCCGTACTTGGTT
CCCTGCACAGTGACACTGCCCACGATTTTAATGGAGCCTTCAGCCTGGAG
GAGTCCAGCTCGCTGGGTGCCGCCGGCGGTGATACATCCGACAGCAAGGA
CAGTCAACAGCAACAACATCAGCAGCACCAGCACCAGCAGCAGGCCGTCA
AAGAGGAGCTTTTGCCCAAGGAGTGGTTCTACGATGACATGGATATGAAC
GATGTGGACTCGCTGGAGGAGCCCAAATCGCCGGCGGATGATGAGTACGA
TTATGATCCGCGCTATGGTAACAAAAAAAGGCGCAAGCGGCGACCAGGCA
AGCGAGGTGGAGATTCCGGCGGCGGTGGTGGTGGAGGAGCGCCGGCGTGC
GCATCGCGTAGCTCAGCTCGCGAGACGCAGTGCAGCGCAGTCGCGTATCA
CACGACGATGCGCGCTGACGCATCGCTGAGCATGATCTGGCGAGAGTGTG
CAGCAGCATGAGACATCTCAGCGAGCATCTACGGCAGCTGGGACAGCTAA
CGGGTCGATCGCGGCGGAGAGAATCGGCTCGGCCAACCGGATCGGACTGG
AACTGCAGGCAGCAGGCAATGCGTGAGCATGCATCCAGTCCGCAGTATCG
GAATCACATC
UFO01394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1579 | 51..1001 | 4320 | 97.5 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1396 | 51..1001 | 4320 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614887..13615424 | 889..352 | 2690 | 100 | Minus |
| X | 23542271 | X | 13615676..13615981 | 356..51 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:19 has no hits.
UFO01394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:40 Download gff for
UFO01394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1410 | 44..1013 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:05 Download gff for
UFO01394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1361 | 44..1013 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:23 Download gff for
UFO01394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1410 | 44..1013 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:23 Download gff for
UFO01394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614738..13615419 | 357..1013 | 96 | <- | Minus |
| X | 13615676..13615985 | 44..356 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:40 Download gff for
UFO01394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13509709..13510018 | 44..356 | 98 | == | Minus |
| arm_X | 13508771..13509452 | 357..1013 | 96 | <- | Minus |
