UFO01395.5prime Sequence
1217 bp (1041 high quality bases) assembled on 2008-08-22
> UFO01395.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTTCGACGAGCCCATAATCTCCAGCTTCGTTTTTACCAACGAG
GAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAGGGCCAGTTACA
CGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGAGCCGCCCTCCC
AGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGCATCTTACCAAG
CAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAGATCGAGACTTT
CTTCTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACACTTCATGGGCG
AGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGATGTTCCAGAAC
AACACCGTGGCCGTGGAGTTCAATCTGGCCTGCTACGTGAACGCCATGGA
CCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGCGGACCACCACTACG
ACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTATGCAGAGGATT
GAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCAGAGTGCAGCAT
CACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGAGGCGGACGGTC
AGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGCTTCAGGAGGAG
GAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAGGCAGAGCTTGC
CAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTGCAACGGCTACT
TCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGCAGTGCAAGACC
ACCAAAGGAGCTGTATGTGGTGCCCTATCATATCAGCGAAACCCTCCAGC
AGCTGCCCAACAAGACTTCCTCATCCTGAACATATCATGGGCCAATTCCA
GCGCTCACGAGCTCTCCACCCCCGTCAATTCCATCGAAAGGGATCAGACA
GCTCGCCGCTAAAGGACCTCCACTGCCGGAGGTGTCGCACCAGTCTCCGC
GACGCAGCAACTGCACATCCACAGAAGCTGGCCTGTGCAGACCTTCTCCG
TGACGCATGCACGCGACTCTGGAGATCTACAGCAGCTGCATTCGGAAGCG
TCTCAGAGCGTTACGATCCAGCCAAACATGATGCGAGGCAATTTGGTCCA
CTACAGGTGGCATTTGA
UFO01395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 160..1255 | 55..1135 | 4965 | 97.9 | Plus |
| CG7271-RA | 1407 | CG7271-RA | 100..1192 | 55..1135 | 4805 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592589..18593612 | 1072..55 | 4685 | 98.7 | Minus |
| 3L | 28110227 | 3L | 18588858..18589878 | 55..1072 | 4500 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:08 has no hits.
UFO01395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:07 Download gff for
UFO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..1199 | 45..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:17 Download gff for
UFO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 145..1193 | 45..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:08 Download gff for
UFO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..1199 | 45..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:08 Download gff for
UFO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592573..18593621 | 45..1087 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:07 Download gff for
UFO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585673..18586721 | 45..1087 | 98 | | Minus |
