UFO01401.5prime Sequence
1127 bp (964 high quality bases) assembled on 2008-09-15
> UFO01401.5prime
CAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGCAGCATTAC
CAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCATCACCATCA
AACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGGTACCAGCC
AACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGACCCATGTTG
TCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTATGGCGAGCA
ATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCGCGTGAAGC
AGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTCAAACTGTG
GTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAGTTATCCAA
GGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACTACAGGACA
TGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACAATTCCGCC
GATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAACGATAGTTT
GGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGCCCAATCCC
ACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGATCCGAGATT
TCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGACCTCAAATT
CGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGAGGAGCTAC
TCGATTATATTTCATCTTGGCAAGAGCAGGCAAGCTTTCTAGACCATTCG
TTTGGGCGCGCGGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACAATAAAAAAACGCCCGGCGGCAACCGAGCGTTCTTGAACAAAT
CCAGGATGGGAGTTCTGAGGTCATTACTGGGATTCTATCAACAGGAGGTC
CAAGGGGAGCTCGATATTCAATTACGCCCCGGCCTGCCACTCATCGCAGT
ACTGGTGGTATTCATTAAGCATTCTGGCGGACTGGTGCATCAAAACGGGC
ATGGATGACCTGAATCGCAGCGGCATC
UFO01401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 8..779 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410566 | 8..779 | 3860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:08 has no hits.
UFO01401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:28 Download gff for
UFO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 73..849 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:23 Download gff for
UFO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 73..849 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:30 Download gff for
UFO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 75..851 | 8..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:30 Download gff for
UFO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409795..410571 | 8..784 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:28 Download gff for
UFO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303828..304604 | 8..784 | 99 | == | Plus |
