UFO01404.5prime Sequence
1111 bp (986 high quality bases) assembled on 2008-09-15
> UFO01404.5prime
CAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAATATACACG
CAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTCAGGCAAAT
CGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGATGCCCCGGA
ATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTGCCTTCCGG
CAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGCCGAAGTGT
GGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGATGCGCACG
AGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGCTGTACGAG
GTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGACCTGTACAA
GAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATTTGAAGATA
TTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAGAGCAACAG
CAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGATGATGGCGA
GGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGAAAGTCAGC
AAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACGAGCTTTGG
CAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATGTCAGATAT
AGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAAGCCTCGTC
GAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCGACTTTCTC
AAACCTGCGAAGAAAAACGAAAAACATACATAAGCCAAAAGGTCCACATC
TGTGACCATTGCGGCAAGAAATTCACCGACAAGGGCAACTTTAGTCTGCA
CCGTGCTGCGCCACTCGGGCGTCAAGCCCTTCGAGTGTCCTGGGTGCGAC
AAAGGAGTTCAACAGTTACATCCTGAACATTCACATTCGGGTGAGCACGC
GGAAAGAAGCCATACGCTTGCCAGTTCTGCGACGAGCGTTTGTGCCAGTA
CTATGGATCGCGCAGAAACGGGTAACCGAACAAGAAACCCTAGACTCAGT
GCCACTATTGC
UFO01404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17802-RA | 1706 | CG17802-RA | 82..1173 | 9..1087 | 5025 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17804074..17804997 | 1041..122 | 4255 | 98.6 | Minus |
| 3R | 32079331 | 3R | 17805055..17805168 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:14 has no hits.
UFO01404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:30 Download gff for
UFO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 82..1158 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:24 Download gff for
UFO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 81..1157 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:33 Download gff for
UFO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 82..1158 | 9..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:33 Download gff for
UFO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17804042..17804996 | 123..1068 | 98 | <- | Minus |
| 3R | 17805055..17805168 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:30 Download gff for
UFO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13629764..13630718 | 123..1068 | 98 | <- | Minus |
| arm_3R | 13630777..13630890 | 9..122 | 100 | | Minus |
