UFO01406.5prime Sequence
1175 bp (1059 high quality bases) assembled on 2008-09-15
> UFO01406.5prime
CAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGTTCGAGGAT
CAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTAGGGCTGTC
CAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACACGGGACGCA
GCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATGGATCGGCG
GCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCGCCGTACTT
CCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCAACAGAACC
ATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGCCCCTCTCC
TCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCGGGACTGAG
ATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGAGGCTGAGC
TGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACACGGATAGG
AGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCACGGAACGAG
ACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCTTCAAAACG
CCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGGCGTTCATG
TCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAAGCCGGGAA
CATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCCTGGTCGCC
TCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAGCCGAAGTA
CAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTGCTGGGCGG
AGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTTGAGGGAAA
GCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGAAAGCGGCCA
ACGTCACCCTACTGACATCCTTGGTTGAGGGGGAGGCAACGCAACTGGCC
AGGACTTTCACTTCGTTTGCGAACCGAATTCCCCGCCAGCAGCTGCGAGT
ACATCGTGCGCCACCAACGGAGCCGCAGGACTCGTACGTCGAAAGAGCTC
ATTCTCCACTCCCAGCAGAATACAAAGAGCTTATGCAAATCCTGACAGAT
CCGACGACCATGACCGAATCACACG
UFO01406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfAP-2-RB | 2219 | CG7807-RB | 425..1573 | 7..1145 | 5445 | 98.8 | Plus |
| TfAP-2-RD | 2237 | CG7807-RD | 425..1591 | 7..1145 | 5255 | 97.3 | Plus |
| TfAP-2-RC | 1805 | CG7807-RC | 69..1159 | 65..1145 | 5155 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21609418..21609649 | 65..296 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 21611143..21611351 | 465..673 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 21611995..21612185 | 673..863 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 21612243..21612509 | 861..1118 | 905 | 96.3 | Plus |
| 3L | 28110227 | 3L | 21609716..21609886 | 294..464 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 21599280..21599339 | 7..66 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:37 has no hits.
UFO01406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:51 Download gff for
UFO01406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfAP-2-RB | 420..1584 | 1..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:27 Download gff for
UFO01406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2-RB | 418..1582 | 1..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:42 Download gff for
UFO01406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfAP-2-RB | 420..1584 | 1..1154 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:42 Download gff for
UFO01406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21599275..21599338 | 1..65 | 95 | -> | Plus |
| 3L | 21609419..21609649 | 66..296 | 100 | -> | Plus |
| 3L | 21609719..21609886 | 297..464 | 100 | -> | Plus |
| 3L | 21611143..21611350 | 465..672 | 100 | -> | Plus |
| 3L | 21611995..21612184 | 673..862 | 100 | -> | Plus |
| 3L | 21612245..21612509 | 863..1119 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:51 Download gff for
UFO01406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21592375..21592438 | 1..65 | 95 | -> | Plus |
| arm_3L | 21602519..21602749 | 66..296 | 100 | -> | Plus |
| arm_3L | 21602819..21602986 | 297..464 | 100 | -> | Plus |
| arm_3L | 21604243..21604450 | 465..672 | 100 | -> | Plus |
| arm_3L | 21605095..21605284 | 673..862 | 100 | -> | Plus |
| arm_3L | 21605345..21605609 | 863..1119 | 95 | -> | Plus |
