UFO01407.5prime Sequence
1150 bp (1021 high quality bases) assembled on 2008-09-15
> UFO01407.5prime
CAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTCAGCCGCCT
GGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGATGGCGCGA
CTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCATATTGGGG
ATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGGCGCATGCG
GAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTCCGCACCGA
AAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTACTACTTGA
ACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGGAAATCCCC
GCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCTCTGGGCCA
GAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGTTTCGATTG
TGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGTACGACATA
CAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAACTGGGCCAT
GTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCACATCAGTA
CCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCGAACTGTTC
CGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCGGAAAACAA
CACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGCCACCAAGA
AGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACAAGTGCACC
ATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACCCACATTCG
GTACCGCCACCTCAAGGACAAACCGCTCAAGTGCAGTGAGTGTGACACGC
GCTGCGTTCGGGAGTCGGATCTGGCCAGCACGTTCAGATTGTCCACTCGA
AGACGGTGCACCAGTGCGAGCATCCCGACTGTCATTATTCTGTACGCACC
TACCGCAGATGCGACGGCACTTCCTCGAAGGTGCACGGCAACAACCCATT
CTGTACGCCTGCCACTGGCTGGCGAGCCCTCTTTCAGGGCCGCCAGTCCC
CTCCTCCCGCTCACTTATGAAGAGACGGTTCCCTGCTCGGCAAATCCTAC
UFO01407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-RB | 2197 | CG17829-RB | 68..1182 | 8..1123 | 5210 | 98.3 | Plus |
| CG17829-RA | 2256 | CG17829-RA | 127..1241 | 8..1123 | 5210 | 98.3 | Plus |
| CG17829-RC | 2199 | CG17829-RC | 374..1184 | 312..1123 | 3690 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 625668..626362 | 8..702 | 3475 | 100 | Plus |
| X | 23542271 | X | 626504..626820 | 703..1017 | 1470 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:19 has no hits.
UFO01407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:35 Download gff for
UFO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..1205 | 8..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:29 Download gff for
UFO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RB | 46..1124 | 8..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:38 Download gff for
UFO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..1205 | 8..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:38 Download gff for
UFO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 625668..626362 | 8..702 | 100 | -> | Plus |
| X | 626504..626820 | 703..1017 | 99 | -> | Plus |
| X | 626899..626956 | 1018..1076 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:35 Download gff for
UFO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 519701..520395 | 8..702 | 100 | -> | Plus |
| arm_X | 520537..520853 | 703..1017 | 99 | -> | Plus |
| arm_X | 520932..520989 | 1018..1076 | 91 | -> | Plus |
