UFO01410.5prime Sequence
1144 bp (1016 high quality bases) assembled on 2008-09-15
> UFO01410.5prime
CAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGCATTGGCAG
CAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCAACACC
ACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGGTGCAA
ATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTCCAGAT
ATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACCGAGTC
ATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTCAGCCG
CCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCAGCGAC
GAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCGCCCAG
CAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGACGACT
GCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCGCTGTG
GAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGGCAGCC
GCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTATTGCA
AAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCTGCCTG
GCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTTGTTTT
TCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGACAAAGG
GAGACCAGTACGGCATCATCGACGCCCTAGATCTACTGCAGGACCCACTA
CAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCCACCT
ACCCGTACAGCGCCGAGTTCGGCTCACCCCACAACGACTCCTCGAGCCCG
CACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTGTGCCCGC
GTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAGGGCAGGCCC
GCAAGGCGCAAGCCCAAGGAAATCGAGGCGTCAACGCTTACATAGATCTC
CACACCTGGAGTACGTTGACTTGGGCCGGAGGGCTCGGCACCCTTAGGCT
CCTCGGTCGGCACAACGGATGCTAACCTCGGTTAGCCATCACAG
UFO01410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RA | 4114 | CG8376-RA | 972..2104 | 7..1142 | 5110 | 97.3 | Plus |
| ap-RC | 3089 | CG8376-RC | 972..2101 | 7..1142 | 5055 | 97 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..1161 | 51..1142 | 4890 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5717281..5717500 | 477..258 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 5708626..5708869 | 1031..790 | 1065 | 96.7 | Minus |
| 2R | 25286936 | 2R | 5717555..5717767 | 259..47 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 792..611 | 830 | 98.4 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 616..475 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 47..7 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:37 has no hits.
UFO01410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:17 Download gff for
UFO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..2050 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:17 Download gff for
UFO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 963..2048 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:46 Download gff for
UFO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..2050 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:46 Download gff for
UFO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5717555..5717766 | 48..259 | 100 | <- | Minus |
| 2R | 5725821..5725864 | 1..47 | 93 | | Minus |
| 2R | 5708611..5708867 | 792..1045 | 96 | <- | Minus |
| 2R | 5708926..5709099 | 617..791 | 98 | <- | Minus |
| 2R | 5716649..5716788 | 477..616 | 100 | <- | Minus |
| 2R | 5717282..5717498 | 260..476 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:17 Download gff for
UFO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1596116..1596372 | 792..1045 | 96 | <- | Minus |
| arm_2R | 1596431..1596604 | 617..791 | 98 | <- | Minus |
| arm_2R | 1604154..1604293 | 477..616 | 100 | <- | Minus |
| arm_2R | 1604787..1605003 | 260..476 | 100 | <- | Minus |
| arm_2R | 1605060..1605271 | 48..259 | 100 | <- | Minus |
| arm_2R | 1613326..1613369 | 1..47 | 93 | | Minus |
