UFO01412.5prime Sequence
1097 bp (963 high quality bases) assembled on 2008-09-15
> UFO01412.5prime
CAGTCGACATGCCTTCCTTCCAACCGATCGAGGCCCCCAAGTGTCCGCGC
TGCGGCAAGAGTGTCTACGCTGCCGAAGAGCGTCTGGCTGGCGGCTATGT
ATTCCACAAGAACTGCTTCAAGTGCGGAATGTGCAACAAATCCCTGGACT
CCACCAACTGCACAGAGCACGAGCGCGAGCTCTACTGCAAGACGTGCCAC
GGTCGCAAGTTCGGGCCGAAAGGTTACGGCTTCGGCACTGGAGCTGGCAC
CCTCTCCATGGACAACGGGTCACAGTTCCTGCGCGAGAACGGCGATGTGC
CGTCCGTAAGGAATGGAGCCCGCCTGGAACCCAGGGCTATTGCTCGTGCC
CCCGAAGGTGAGGGCTGTCCTCGTTGCGGTGGCTATGTGTACGCCGCCGA
ACAGATGTTAGCCCGCGGTCGCAGCTGGCACAAGGAGTGCTTCAAGTGCG
GTACCTGCAAGAAGGGTCTGGACTCGATCCTGTGCTGCGAGGCTCCGGAC
AAGAACATCTACTGCAAGGGCTGCTATGCCAAGAAGTTTGGACCCAAGGG
CTATGGTTATGGCCAGGGCGGTGGTGCTCTCCAGTCCGACTGCTATGCTC
ACGACGACGGAGCACCGCAAATCCGTGCCGCCATTGATGTGGACAAGATC
CAGGCCCGTCCGGGTGAGGGTTGCCCACGTTGCGGCGGTGTGGTCTACGC
AGCGGAGCAGAAGCTTTCCAAGGGTCGGGAGTGGCACAAGAGGTGCTTCA
ACTGCAAGGATTGCCACAAGACTCTGGACTCGATCAATGCCAGTGATGGT
CCCGATCGTGATGTGTACTGCCGCACCTGCTACGGCAAGAAGTGGGGACC
ACATGGCTATGGATTCGCATGCGGCTCTGGTTTCCTGCAGACCGATGGCT
TGACCGAGATCAGATCAGCGCCAACAGGCCCTTCTATACCGGGACACCAC
GTCAATTAAGGCCCGTGACGGCGAAGCTGTCCCCGTGCGGAGGAGCCGTA
TTCGCGCGAGCACAGCTGTCAAGGCAAGGGTGTGCCAGATGCTACAACTG
CGCCGACTGCCACGTCATGAACTCGGGTCTTGACTTGCAATGGACCG
UFO01412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlp84B-RC | 3071 | CG1019-RC | 162..1229 | 9..1063 | 4955 | 98.3 | Plus |
Mlp84B-RB | 2382 | CG1019-RB | 145..1212 | 9..1063 | 4955 | 98.3 | Plus |
Mlp84B-RA | 2399 | CG1019-RA | 162..1229 | 9..1063 | 4955 | 98.3 | Plus |
Mlp84B-RC | 3071 | CG1019-RC | 1114..1301 | 652..839 | 205 | 73.9 | Plus |
Mlp84B-RB | 2382 | CG1019-RB | 1097..1284 | 652..839 | 205 | 73.9 | Plus |
Mlp84B-RC | 3071 | CG1019-RC | 1482..1586 | 732..836 | 195 | 79 | Plus |
Mlp84B-RB | 2382 | CG1019-RB | 1465..1569 | 732..836 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7114759..7115759 | 1005..9 | 4775 | 99.4 | Minus |
2R | 25286936 | 2R | 24076718..24076945 | 672..899 | 315 | 75.9 | Plus |
2R | 25286936 | 2R | 24075451..24075586 | 129..264 | 245 | 78.7 | Plus |
3R | 32079331 | 3R | 7114620..7114807 | 839..652 | 205 | 73.9 | Minus |
3R | 32079331 | 3R | 7114335..7114439 | 836..732 | 195 | 79 | Minus |
2R | 25286936 | 2R | 24075245..24075336 | 34..125 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:06 has no hits.
UFO01412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:41 Download gff for
UFO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp84B-RA | 154..1229 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:20 Download gff for
UFO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp84B-RB | 135..1210 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:17 Download gff for
UFO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp84B-RA | 154..1229 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:17 Download gff for
UFO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7114692..7115767 | 1..1063 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:41 Download gff for
UFO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2940414..2941489 | 1..1063 | 98 | | Minus |