UFO01413.5prime Sequence
1109 bp (948 high quality bases) assembled on 2008-09-15
> UFO01413.5prime
CAGTCGACATGCAAACGTTATTCAGCGACCAGAACTCCTTTACGCGCCAC
TATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTGGCGGCGGC
CAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGACCAGTACT
CCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCCCGCACCAG
AACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTGATAGCCAT
GGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGGGATCTATC
AGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGCAGGGCTGG
CAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTCGTGAAGGT
GGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGACTCTGGATC
CGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCCGGCGTCGC
CGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCCATCAAGCG
GCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCTCAAGCTGA
TGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATGCTGCCCAC
TTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGCAAGGAGGT
CTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGCCCAAATGAC
CCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCGTGGACTCAC
TCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTATCCCTACCAC
TTGAACGAGGAAACTTGGGCCACGTGGCCAGCAGTCAGATGCATCATGTC
CACCACGCTGCGGCGGCCCATCATGCCCAGCAACTGCAGCGTCATGTGGG
CGCACGTGCCCATCCTCTGACCCCGGCGCCAAGGAGCGGGAGGCAATCGT
CCGGACCCTCGCCCACCACGATCTCACTCCGCATGTCCCGCGCACGGGGG
TTGATAACCCCGGAACGCCACATCGGACCCGTCCTCCAATGGTCACAGCC
ACCCCCCCA
UFO01413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| croc-RA | 2347 | CG5069-RA | 285..1382 | 8..1092 | 5015 | 98.1 | Plus |
| fd59A-RA | 2228 | CG3668-RA | 593..876 | 213..496 | 325 | 74.7 | Plus |
| fd64A-RB | 1414 | CG1132-RB | 486..669 | 215..398 | 290 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21475143..21476195 | 1053..8 | 4720 | 98.3 | Minus |
| 2L | 23513712 | 2L | 3826211..3826373 | 286..448 | 245 | 76.7 | Plus |
| 3L | 28110227 | 3L | 4020416..4020478 | 336..398 | 240 | 92.1 | Plus |
| 3R | 32079331 | 3R | 25083588..25083851 | 216..479 | 225 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:31 has no hits.
UFO01413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:08 Download gff for
UFO01413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| croc-RA | 279..1382 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:42 Download gff for
UFO01413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| croc-RA | 356..1459 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:12 Download gff for
UFO01413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| croc-RA | 279..1382 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:12 Download gff for
UFO01413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21475098..21476201 | 1..1092 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:08 Download gff for
UFO01413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21468198..21469301 | 1..1092 | 97 | | Minus |
