UFO01414.5prime Sequence
1159 bp (1032 high quality bases) assembled on 2008-09-15
> UFO01414.5prime
CAGTCGACATGGATAAACTCAAGTACAGCCGCTGCCCGCTCAAGAAGCGT
CCGATAATGGTGGAGGAGTCCAGCCCAGAGGATCACCTAAGTCATGATGA
AGGACCAGTGGACTTGAGTGTGGCCTCGGCTGCAGTGCCTATGGAGCCCC
ATTGGATGGCTAAATCCGAACCGGAACCTCAGCCGGTGCCCACGGAATTG
AGGCGCCGCTTCGATGCAGCCATGAATCAGACCAAGGAGCAGTTGGCCCG
TCGCATTTGGGAGGAAACCCGTGAGATAGCCCGCGCTTTTCCGGATGTCT
TCACCCGGGAGGAAATCGCCAAGAGTCTTGCTCGCCTGGGTTACGGCGAG
TTCGAGTTGCCACCTGAGGAGGAAGTAATGGAGCCGGAGCCGGAACCAGA
ACAGCATCTGCCTCTTCGATATACAAGAGATGCTAGCCCAACCATCATCA
AGGCTGAACCCTCTGATGAGGAACAATTTCCCCTGCGAAACTACAATAAC
AACCTACTCAAAAGCATAGCCGAGTATGAGGACTGTATGAAAATGCAGAA
CATCAAAGAGGAGATACCTCCGATTCCATCACCCCAGTTGTTCTATCCAC
CCCCGACTCCACTGGCCGAACCGGAGGACCTATCCGTAACCCAGAGGAGA
GTGCTGAGCGAAAACATGAATCTGCAGAATGTGGCCAGAGCTTTGCTGAG
CATGCAACACATGGCTCCGCAACATGCGCCGCCTCCGATAGACATGGAAG
AGGATCAGGAGAATCAGGACATCAACCAGCTGAAGATCAAGAGCAGCAAT
GATCTGTACTACCAGTGCCAGCAGTGCAACAAGTGCTATGCCACCTATGC
AGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAGCACCGAGTACA
GATCATTAGAAGCCAGCCTGGAGGATCAGGGCGATAGTCGACCAAACCGA
GTTTGCACGGATCAGCTTCGGCTTTGATTCAGGCAGCTAATGTAGCCTCA
GCACAGAGCATGCAAAGCCAGGGGGGGAGTGCCGCGAAACAATTGCAGGA
TGGCGGAAAGAGCTACTCCACCTACTCGGGACTCTCTAGCACAGCAGTTC
CATTGTTCCGGTCGGGCGAGGCCAATCAGGTGAAAGGGTCTTACACTGCA
ACTGCCAAG
UFO01414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wor-RA | 2222 | CG4158-RA | 150..1289 | 8..1142 | 5300 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15424239..15425281 | 1134..96 | 4600 | 98.2 | Minus |
| 2L | 23513712 | 2L | 15425343..15425431 | 96..8 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:21 has no hits.
UFO01414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:50 Download gff for
UFO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wor-RA | 143..1298 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:45 Download gff for
UFO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wor-RA | 148..1303 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:27 Download gff for
UFO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wor-RA | 143..1298 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:27 Download gff for
UFO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15424221..15425280 | 97..1151 | 97 | <- | Minus |
| 2L | 15425343..15425435 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:50 Download gff for
UFO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15424221..15425280 | 97..1151 | 97 | <- | Minus |
| arm_2L | 15425343..15425435 | 1..96 | 95 | | Minus |
