UFO01415.5prime Sequence
1163 bp (1058 high quality bases) assembled on 2008-09-15
> UFO01415.5prime
CAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTGCTGCTGCA
GCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCAGCCTCACC
GGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAAGGCAAGCG
CAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGAAGCACCAC
AGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACAGCAGCGCA
CAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCACCGCTGCAA
CATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAGCTGCAACA
GCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCTGCGGTCGT
TCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGCCGCCCTAC
TGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGGCCCTGGAA
TCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTATTTCGCTT
TTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCACCACCTGCA
ACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGCTCATCGAT
ATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCCTCGGGGGA
ACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATCCTCGCCCA
GCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCAAGTGCGTG
CCTCTGCCCTCCATTGGCACCGTTAGTGCTGCAGTGGCGGCTGCTGCGGC
TGCCGCAGCAGCTGCTGCGAGCCAACAGGCGGCGCTGGACTGCGCAACAG
CCGCAGAACTGGCAGCAGAGTGCGACTTACCGTTGCTCGATGGCGAGGAT
GCTCTCTCCTTCGAGGCGGGAGATTTGGACAGCAGCTATGGAAGCTTCAT
GTTTAATCCCTCAGCCTTCAGCCAGCGGAAACGGACTCGGCTCTGCACTC
GCTGCAGGCCACATGTACAGAAAAAGAATGGAGTGTCATTTCGGGAGCGG
CTGGCGGCTAAGGGCAAGGTGCGGTAGAAGCCTGAGAGAGCGGTCAGCCG
GGGGCGCAACGGC
UFO01415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sob-RA | 2611 | CG3242-RA | 591..1710 | 9..1127 | 5380 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3579060..3580179 | 1127..9 | 5275 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2877 | 15..635 | 316 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2750..2974 | 134..371 | 238 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 258..385 | 219 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1599 | 715..788 | 186 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7019 | 321..602 | 165 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6875 | 711..790 | 164 | 69.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1154 | 715..787 | 164 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2436 | 712..790 | 162 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6889 | 552..918 | 162 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6923 | 711..787 | 158 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 98..224 | 694..816 | 155 | 63.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9128..9254 | 694..816 | 155 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6791 | 319..394 | 141 | 70.5 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 538..622 | 784..694 | 127 | 62.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1560 | 733..790 | 121 | 69.5 | Plus |
UFO01415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:30 Download gff for
UFO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 591..1713 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:47 Download gff for
UFO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 588..1710 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:04 Download gff for
UFO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 591..1713 | 9..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:04 Download gff for
UFO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3579057..3580179 | 9..1130 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:30 Download gff for
UFO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3579057..3580179 | 9..1130 | 98 | | Minus |
