UFO01416.5prime Sequence
1125 bp (1033 high quality bases) assembled on 2008-09-15
> UFO01416.5prime
CAGTCGACATGGTTGGGAGATCATCGGGAAAAATGGAAAGATCAGTGGAC
GCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCATCCATACT
GGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTGGGAAATGT
TGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATGAAATGCCA
CAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCCTTTCACTT
CCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCTCCTCCAGC
TCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAAGAGGTACT
ATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCGAGGATCCATTGGA
CACAAATGTAACCAAATTGGACGCTAATCGGCCTGATGTAAAAACTGATA
TCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGAGTGAACCA
TTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACGGAAGATGA
AGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGAAAATGATA
ATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGACAGTGGGC
TCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGAGGGCGCCA
AACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTGTGGAGTGA
GTTACTCGACTCAAAAGCGTTGGCAAGGCACGTTGCCAAGCACAAGGAGC
AAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGTCGGGGATTT
CGTACCAATGCCCAGCTAACGACCCATAGACGCCGTCATACTGGAGAGCG
TCCTTTTAAATGCCCCCTCTGCCCGAAAGCTTATACGCACGGTCCGACTC
TGAGTCGCATATGCACACCCACGACGAGGAAAAGGTCACAAATGTCACAG
TGCGACAAACTTTTACCGAAGAGGCATCTAGGCCATATACGAGCACACTG
CGACGACCTATACTGTCGACTGCCCAACTTGCAAACTCTGGCTTAGTGCA
AGCGTCTGCAAGAAACGACCTTATG
UFO01416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..1159 | 9..1076 | 4950 | 98.1 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..1123 | 520..1076 | 2395 | 96.4 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 9..483 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13964119..13964629 | 519..9 | 2555 | 100 | Minus |
| 3L | 28110227 | 3L | 13963520..13964013 | 1009..520 | 2270 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:38 has no hits.
UFO01416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:19 Download gff for
UFO01416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..1101 | 4..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:48 Download gff for
UFO01416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 62..1092 | 4..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:43 Download gff for
UFO01416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..1101 | 4..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:43 Download gff for
UFO01416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13963497..13964013 | 520..1029 | 98 | <- | Minus |
| 3L | 13964119..13964632 | 4..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:19 Download gff for
UFO01416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13956597..13957113 | 520..1029 | 98 | <- | Minus |
| arm_3L | 13957219..13957732 | 4..519 | 99 | | Minus |
