UFO01417.5prime Sequence
1100 bp (1009 high quality bases) assembled on 2008-09-15
> UFO01417.5prime
CAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTAGTCCCGAG
GATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACACCAACCAG
TGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATATCAGTCGCC
TGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATTGCGATGAT
AACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCTCCTTTGAG
TCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCTGATGTCGC
TGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATTTGAACCAC
CTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGACGCCAATGG
TGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCACTCAGTCTC
CATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGGTAATTTCA
GTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCTCCCTCGGG
TTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGCAGCCGCCG
CCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGCTGGCCCTG
CCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGCTTGGGCAT
GAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTTTGCCCAGT
TCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGCAGTTCAAC
AGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGCCTGGCACAGGACGA
TCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAATGCAGAGCC
AACTGCAGCCCTCAGTCAGCCAGTCAGCATTGCAGCACTGCAGAGCACAG
CAGCGCCAGGTGGATGAGCCACTGCAGCTGACCACAGATGACGCACAGCC
ACGCAGTTCCACACCGCCCTCGATCGCAGCCCATCGCATCGCAGTCGCAG
CTCACCCAGCGTGCACCATCACCACCACAATCATGCAAATCCGCCGCCCA
UFO01417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nub-RE | 2829 | CG34395-RE | 214..1327 | 9..1100 | 5010 | 97.8 | Plus |
| nub-RD | 3267 | CG34395-RD | 652..1765 | 9..1100 | 5010 | 97.8 | Plus |
| nub-RB | 4497 | CG34395-RB | 2012..2995 | 139..1100 | 4360 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12625454..12626305 | 183..1025 | 3800 | 98.6 | Plus |
| 2L | 23513712 | 2L | 12618996..12619125 | 9..138 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 12622975..12623019 | 139..183 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:50 has no hits.
UFO01417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:59 Download gff for
UFO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 646..1764 | 3..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:51 Download gff for
UFO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 643..1761 | 3..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:49 Download gff for
UFO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 646..1764 | 3..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:49 Download gff for
UFO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12618990..12619125 | 3..138 | 97 | -> | Plus |
| 2L | 12622975..12623019 | 139..183 | 100 | -> | Plus |
| 2L | 12625455..12626392 | 184..1099 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:59 Download gff for
UFO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12618990..12619125 | 3..138 | 97 | -> | Plus |
| arm_2L | 12622975..12623019 | 139..183 | 100 | -> | Plus |
| arm_2L | 12625455..12626392 | 184..1099 | 97 | | Plus |
