UFO01418.5prime Sequence
1036 bp (985 high quality bases) assembled on 2008-09-15
> UFO01418.5prime
CAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGGCGCCAAAC
AGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACGCCCATAAA
GATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGCGGCTATGC
AGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCACCGTCTCC
TCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAGCAGACGGT
TCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAATCCCAGCA
TGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGGAGAAGACC
ACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCCACCATCGA
CAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGGCCAGGTGG
ATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAATCATGAAG
CTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTACTGTTTGC
CAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGCTTGGGTGC
ACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACATTGCCCAG
GCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATTGTGCCGCG
CGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGGCAGTACAT
CCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCTCCACCTCC
AACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCGGGCAATGCTACCGC
CACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGACCACCGCTG
GTGGCCTCAAGCTGGACACCACGGATGCAACCAATGCCGCCGAGGTGCTC
GGCTTCAGCACTGTCAACTCGGAACCAGCCAGAGCACTAGCTGACGGGCG
CTATGGGGATGAGGTGGTGTTCAGCATGTTTAATTG
UFO01418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 193..1158 | 8..973 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819604..6820528 | 973..49 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 6820683..6820727 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:57 has no hits.
UFO01418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:09 Download gff for
UFO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..1158 | 1..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:54 Download gff for
UFO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-RA | 183..1154 | 1..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:49 Download gff for
UFO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..1158 | 1..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:49 Download gff for
UFO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6819604..6820524 | 53..973 | 99 | <- | Minus |
| X | 6820683..6820732 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:09 Download gff for
UFO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6713637..6714557 | 53..973 | 99 | <- | Minus |
| arm_X | 6714716..6714765 | 1..52 | 92 | | Minus |
