UFO01419.5prime Sequence
1124 bp (1006 high quality bases) assembled on 2008-09-15
> UFO01419.5prime
CAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTATCGTATTT
GACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGCGACTTCCT
GGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGAGCAGCTGG
CCAACCATAATAATAACAACAACAATAATAACGATCTGATCATGGAACAG
GACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTGCCGCAGCA
GGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGCTGCCGTGG
AGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGGAAGAAGAC
GACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCGGAGTCAGA
ATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGATGAGCTGG
ACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCCTCTCGTCG
GATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTACGCCTTCCA
GCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATATACCCGGTG
GATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCAATTCGCAT
CTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCTGCATCACG
CCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAACTTTGCCA
CGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCAATATGCCC
GTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGTGTTGATTTC
TCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCAACGACTGTT
ACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTGATCGCCTCA
GGTATGGTGACCTGCCCACGGCTCAGTACGGACCGGGATAGTGATCCACA
GCACTTCTCTACACATCGGCGACGACGGGATTTGATTACACTTGTGATGT
TATCGTTGATTGCGCACGTATATGGGGAATTTGTACATTAGTCGTCGGAA
TGGCGGACGACCGAAAGGCCCCTA
UFO01419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 510..1614 | 9..1096 | 5095 | 98.2 | Plus |
| slim-RA | 3081 | CG5186-RA | 510..1614 | 9..1096 | 5095 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18441474..18442313 | 9..848 | 4200 | 100 | Plus |
| 2R | 25286936 | 2R | 18443655..18443867 | 849..1051 | 620 | 94.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 153..181 | 118 | 89.7 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 153..181 | 118 | 89.7 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2873..2928 | 158..211 | 112 | 71.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2767..2822 | 158..211 | 112 | 71.4 | Plus |
UFO01419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:30 Download gff for
UFO01419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1582 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:55 Download gff for
UFO01419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 511..1590 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:52 Download gff for
UFO01419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1582 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:52 Download gff for
UFO01419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18441467..18442313 | 1..848 | 99 | -> | Plus |
| 2R | 18443655..18443887 | 849..1067 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:30 Download gff for
UFO01419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14328972..14329818 | 1..848 | 99 | -> | Plus |
| arm_2R | 14331160..14331392 | 849..1067 | 93 | | Plus |
